public class NIfTI1ToDicom
extends java.lang.Object
A class for converting NIfTI-1 image input format files into images of a specified or appropriate SOP Class.
Constructor and Description |
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NIfTI1ToDicom(java.lang.String inputFileName,
java.lang.String outputFileName,
java.lang.String patientName,
java.lang.String patientID,
java.lang.String studyID,
java.lang.String seriesNumber,
java.lang.String instanceNumber)
Read a NIfTI-1 image input format files and create an image of a specified or appropriate SOP Class.
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NIfTI1ToDicom(java.lang.String inputFileName,
java.lang.String outputFileName,
java.lang.String patientName,
java.lang.String patientID,
java.lang.String studyID,
java.lang.String seriesNumber,
java.lang.String instanceNumber,
java.lang.String modality,
java.lang.String sopClass)
Read a NIfTI-1 image input format files and create an image of a specified or appropriate SOP Class.
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Modifier and Type | Method and Description |
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static AttributeList |
generateDICOMPixelDataModuleAttributesFromNIfTI1File(java.io.File inputFile,
NIfTI1Header nifti,
AttributeList list)
Using a NIfTI-1 image input file and header, create DICOM Pixel Data Module attributes.
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static AttributeList |
generateGeometryFunctionalGroupsFromNIfTI1Header(NIfTI1Header nifti,
AttributeList list,
int numberOfFrames)
Read a per-frame and shared functional group sequences for the geometry defined in a NIfTI-1 file header.
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static void |
main(java.lang.String[] arg)
Read a NIfTI-1 image input format files and create an image of a specified or appropriate SOP Class.
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public NIfTI1ToDicom(java.lang.String inputFileName, java.lang.String outputFileName, java.lang.String patientName, java.lang.String patientID, java.lang.String studyID, java.lang.String seriesNumber, java.lang.String instanceNumber) throws java.io.IOException, DicomException, NIfTI1Exception
Read a NIfTI-1 image input format files and create an image of a specified or appropriate SOP Class.
inputFileName
- outputFileName
- patientName
- patientID
- studyID
- seriesNumber
- instanceNumber
- java.io.IOException
DicomException
NIfTI1Exception
public NIfTI1ToDicom(java.lang.String inputFileName, java.lang.String outputFileName, java.lang.String patientName, java.lang.String patientID, java.lang.String studyID, java.lang.String seriesNumber, java.lang.String instanceNumber, java.lang.String modality, java.lang.String sopClass) throws java.io.IOException, DicomException, NIfTI1Exception
Read a NIfTI-1 image input format files and create an image of a specified or appropriate SOP Class.
inputFileName
- outputFileName
- patientName
- patientID
- studyID
- seriesNumber
- instanceNumber
- modality
- may be nullsopClass
- may be nulljava.io.IOException
DicomException
NIfTI1Exception
public static AttributeList generateGeometryFunctionalGroupsFromNIfTI1Header(NIfTI1Header nifti, AttributeList list, int numberOfFrames) throws DicomException
Read a per-frame and shared functional group sequences for the geometry defined in a NIfTI-1 file header.
nifti
- a NIfTI-1 headerlist
- an existing (possibly empty) attribute list, if null, a new one will be created; may already shared and per-frame functional group sequences or they will be addednumberOfFrames
- return attribute list with per-frame and shared functional group sequences for geometry addedDicomException
public static AttributeList generateDICOMPixelDataModuleAttributesFromNIfTI1File(java.io.File inputFile, NIfTI1Header nifti, AttributeList list) throws java.io.IOException, DicomException, NIfTI1Exception
Using a NIfTI-1 image input file and header, create DICOM Pixel Data Module attributes.
inputFile
- a NIfTI-1 format image filenifti
- a NIfTI-1 header already read from the inputFilelist
- an existing (possibly empty) attribute list, if null, a new one will be created; may already include "better" image pixel module attributes to use
return attribute list with Image Pixel Module (including Pixel Data) and other attributes addedjava.io.IOException
DicomException
NIfTI1Exception
public static void main(java.lang.String[] arg)
Read a NIfTI-1 image input format files and create an image of a specified or appropriate SOP Class.
arg
- seven, eight or nine parameters, the inputFile, outputFile, patientName, patientID, studyID, seriesNumber, instanceNumber, and optionally the modality, and SOP Class