Constructor and Description |
---|
AlgebraicRule(long level,
long version)
|
AlgebraicRule(SBMLNamespaces sbmlns)
|
AssignmentRule(long level,
long version)
|
AssignmentRule(SBMLNamespaces sbmlns)
|
Association()
Creates a new
Association objet with the given SBML Level, Version, and
“fbc” package version. |
Association(Association source)
Copy constructor.
|
Association(FbcPkgNamespaces fbcns)
Creates a new
Association with the given FbcPkgNamespaces object. |
Association(long level)
Creates a new
Association objet with the given SBML Level, Version, and
“fbc” package version. |
Association(long level,
long version)
Creates a new
Association objet with the given SBML Level, Version, and
“fbc” package version. |
Association(long level,
long version,
long pkgVersion)
Creates a new
Association objet with the given SBML Level, Version, and
“fbc” package version. |
Association(XMLNode node,
FbcPkgNamespaces fbcns) |
BoundingBox()
Default Constructor set position and dimensions to (0.0,0.0,0.0) and
the id to an empty string.
|
BoundingBox(BoundingBox orig)
Copy constructor.
|
BoundingBox(LayoutPkgNamespaces layoutns)
Creates a new
BoundingBox object with the given LayoutPkgNamespaces object. |
BoundingBox(LayoutPkgNamespaces layoutns,
java.lang.String id)
Constructor set position and dimensions to (0.0,0.0,0.0) and the id to
a copy of the given string.
|
BoundingBox(LayoutPkgNamespaces layoutns,
java.lang.String id,
double x,
double y,
double width,
double height)
Constructor which sets the id, the coordinates and the dimensions to
the given 2D values.
|
BoundingBox(LayoutPkgNamespaces layoutns,
java.lang.String id,
double x,
double y,
double z,
double width,
double height,
double depth)
Constructor which sets the id, the coordinates and the dimensions to
the given 3D values.
|
BoundingBox(LayoutPkgNamespaces layoutns,
java.lang.String id,
Point p,
Dimensions d)
Constructor which sets the id, the coordinates and the dimensions to
the given values.
|
BoundingBox(long level)
Default Constructor set position and dimensions to (0.0,0.0,0.0) and
the id to an empty string.
|
BoundingBox(long level,
long version)
Default Constructor set position and dimensions to (0.0,0.0,0.0) and
the id to an empty string.
|
BoundingBox(long level,
long version,
long pkgVersion)
Default Constructor set position and dimensions to (0.0,0.0,0.0) and
the id to an empty string.
|
BoundingBox(XMLNode node)
Creates a new
BoundingBox from the given XMLNode |
BoundingBox(XMLNode node,
long l2version)
Creates a new
BoundingBox from the given XMLNode |
ColorDefinition()
Creates a new
ColorDefinition object with the given SBML level
and SBML version. |
ColorDefinition(long level)
Creates a new
ColorDefinition object with the given SBML level
and SBML version. |
ColorDefinition(long level,
long version)
Creates a new
ColorDefinition object with the given SBML level
and SBML version. |
ColorDefinition(long level,
long version,
long pkgVersion)
Creates a new
ColorDefinition object with the given SBML level
and SBML version. |
ColorDefinition(RenderPkgNamespaces renderns)
Creates a new
ColorDefinition object with the given SBMLNamespaces . |
ColorDefinition(RenderPkgNamespaces renderns,
short r,
short g,
short b)
Constructor which sets the
ColorDefinition to the given RGBA values. |
ColorDefinition(RenderPkgNamespaces renderns,
short r,
short g,
short b,
short a)
Constructor which sets the
ColorDefinition to the given RGBA values. |
ColorDefinition(RenderPkgNamespaces renderns,
java.lang.String id)
Constructor which sets the
ColorDefinition to completely opaque
black and sets the id to the given string. |
ColorDefinition(RenderPkgNamespaces renderns,
java.lang.String id,
short r,
short g,
short b)
Constructor which sets the
ColorDefinition to the given RGBA values
and sets the id. |
ColorDefinition(RenderPkgNamespaces renderns,
java.lang.String id,
short r,
short g,
short b,
short a)
Constructor which sets the
ColorDefinition to the given RGBA values
and sets the id. |
ColorDefinition(XMLNode node)
Creates a new
ColorDefinition object from the given XMLNode object. |
ColorDefinition(XMLNode node,
long l2version)
Creates a new
ColorDefinition object from the given XMLNode object. |
Compartment(Compartment orig)
Copy constructor.
|
Compartment(long level,
long version)
|
Compartment(SBMLNamespaces sbmlns)
|
CompartmentGlyph()
Default Constructor which creates a new
CompartmentGlyph . |
CompartmentGlyph(CompartmentGlyph source)
Copy constructor.
|
CompartmentGlyph(LayoutPkgNamespaces layoutns)
Ctor.
|
CompartmentGlyph(LayoutPkgNamespaces layoutns,
java.lang.String id)
Constructor which creates a new
CompartmentGlyph with the given id . |
CompartmentGlyph(LayoutPkgNamespaces layoutns,
java.lang.String id,
java.lang.String compartmentId)
Constructor which creates a new
CompartmentGlyph . |
CompartmentGlyph(long level)
Default Constructor which creates a new
CompartmentGlyph . |
CompartmentGlyph(long level,
long version)
Default Constructor which creates a new
CompartmentGlyph . |
CompartmentGlyph(long level,
long version,
long pkgVersion)
Default Constructor which creates a new
CompartmentGlyph . |
CompartmentGlyph(XMLNode node)
Creates a new
CompartmentGlyph from the given XMLNode |
CompartmentGlyph(XMLNode node,
long l2version)
Creates a new
CompartmentGlyph from the given XMLNode |
CompartmentType(CompartmentType orig)
Copy constructor; creates a copy of this
CompartmentType object. |
CompartmentType(long level,
long version)
|
CompartmentType(SBMLNamespaces sbmlns)
|
CompPkgNamespaces() |
CompPkgNamespaces(CompPkgNamespaces orig) |
CompPkgNamespaces(long level) |
CompPkgNamespaces(long level,
long version) |
CompPkgNamespaces(long level,
long version,
long pkgVersion) |
CompPkgNamespaces(long level,
long version,
long pkgVersion,
java.lang.String prefix) |
Constraint(Constraint orig)
Copy constructor; creates a copy of this
Constraint . |
Constraint(long level,
long version)
|
Constraint(SBMLNamespaces sbmlns)
|
CubicBezier()
Creates a
CubicBezier and returns the pointer. |
CubicBezier(CubicBezier orig)
Copy constructor.
|
CubicBezier(LayoutPkgNamespaces layoutns)
Ctor.
|
CubicBezier(LayoutPkgNamespaces layoutns,
double x1,
double y1,
double x2,
double y2)
Creates a
CubicBezier with the given 2D coordinates and returns the
pointer. |
CubicBezier(LayoutPkgNamespaces layoutns,
double x1,
double y1,
double z1,
double x2,
double y2,
double z2)
Creates a
CubicBezier with the given 3D coordinates and returns the
pointer. |
CubicBezier(LayoutPkgNamespaces layoutns,
Point start,
Point end)
Creates a
CubicBezier with the given points and returns the pointer. |
CubicBezier(LayoutPkgNamespaces layoutns,
Point start,
Point base1,
Point base2,
Point end)
Creates a
CubicBezier with the given points and returns the pointer. |
CubicBezier(long level)
Creates a
CubicBezier and returns the pointer. |
CubicBezier(long level,
long version)
Creates a
CubicBezier and returns the pointer. |
CubicBezier(long level,
long version,
long pkgVersion)
Creates a
CubicBezier and returns the pointer. |
CubicBezier(XMLNode node)
|
CubicBezier(XMLNode node,
long l2version)
|
Curve()
Creates a curve with an empty list of segments.
|
Curve(Curve source)
Copy constructor.
|
Curve(LayoutPkgNamespaces layoutns)
Creates a new
Curve with the given LayoutPkgNamespaces object. |
Curve(long level)
Creates a curve with an empty list of segments.
|
Curve(long level,
long version)
Creates a curve with an empty list of segments.
|
Curve(long level,
long version,
long pkgVersion)
Creates a curve with an empty list of segments.
|
Curve(XMLNode node)
|
Curve(XMLNode node,
long l2version)
|
DefaultTerm()
Creates a new
DefaultTerm with the given level, version, and package version. |
DefaultTerm(DefaultTerm orig)
Copy constructor for
DefaultTerm . |
DefaultTerm(long level)
Creates a new
DefaultTerm with the given level, version, and package version. |
DefaultTerm(long level,
long version)
Creates a new
DefaultTerm with the given level, version, and package version. |
DefaultTerm(long level,
long version,
long pkgVersion)
Creates a new
DefaultTerm with the given level, version, and package version. |
DefaultTerm(QualPkgNamespaces qualns)
Creates a new
DefaultTerm with the given QualPkgNamespaces object. |
Delay(Delay orig)
Copy constructor; creates a copy of this
Delay . |
Delay(long level,
long version)
|
Delay(SBMLNamespaces sbmlns)
|
Deletion()
Creates a new
Deletion with the given level, version, and package version. |
Deletion(CompPkgNamespaces compns)
Creates a new
Deletion with the given CompPkgNamespaces object. |
Deletion(Deletion source)
Copy constructor.
|
Deletion(long level)
Creates a new
Deletion with the given level, version, and package version. |
Deletion(long level,
long version)
Creates a new
Deletion with the given level, version, and package version. |
Deletion(long level,
long version,
long pkgVersion)
Creates a new
Deletion with the given level, version, and package version. |
Dimensions()
Creates a new
Dimensions object with the given level, version, and package version
and with all sizes set to 0.0. |
Dimensions(Dimensions orig)
Copy constructor.
|
Dimensions(LayoutPkgNamespaces layoutns)
Creates a new
Dimensions object with the given LayoutPkgNamespaces object. |
Dimensions(LayoutPkgNamespaces layoutns,
double w,
double h)
Creates a new
Dimensions object with the given sizes. |
Dimensions(LayoutPkgNamespaces layoutns,
double w,
double h,
double d)
Creates a new
Dimensions object with the given sizes. |
Dimensions(long level)
Creates a new
Dimensions object with the given level, version, and package version
and with all sizes set to 0.0. |
Dimensions(long level,
long version)
Creates a new
Dimensions object with the given level, version, and package version
and with all sizes set to 0.0. |
Dimensions(long level,
long version,
long pkgVersion)
Creates a new
Dimensions object with the given level, version, and package version
and with all sizes set to 0.0. |
Dimensions(XMLNode node)
Creates a new
Dimensions object from the given XMLNode |
Dimensions(XMLNode node,
long l2version)
Creates a new
Dimensions object from the given XMLNode |
Ellipse()
Creates a new
Ellipse object with the given SBML level
and SBML version. |
Ellipse(long level)
Creates a new
Ellipse object with the given SBML level
and SBML version. |
Ellipse(long level,
long version)
Creates a new
Ellipse object with the given SBML level
and SBML version. |
Ellipse(long level,
long version,
long pkgVersion)
Creates a new
Ellipse object with the given SBML level
and SBML version. |
Ellipse(RenderPkgNamespaces renderns)
Creates a new
Ellipse object with the given SBMLNamespaces . |
Ellipse(RenderPkgNamespaces renderns,
RelAbsVector cx,
RelAbsVector cy,
RelAbsVector r)
Constructor with 2D center and radius.
|
Ellipse(RenderPkgNamespaces renderns,
RelAbsVector cx,
RelAbsVector cy,
RelAbsVector rx,
RelAbsVector ry)
Constructor with 2D center and radii.
|
Ellipse(RenderPkgNamespaces renderns,
RelAbsVector cx,
RelAbsVector cy,
RelAbsVector cz,
RelAbsVector rx,
RelAbsVector ry)
Constructor with 3D center and radii.
|
Ellipse(RenderPkgNamespaces renderns,
java.lang.String id)
Instantiates a new ellipse object with the center set to 0,0,0
and the radii also set to 0.
|
Ellipse(RenderPkgNamespaces renderns,
java.lang.String id,
RelAbsVector cx,
RelAbsVector cy,
RelAbsVector r)
Constructor with id, 2D center and radius.
|
Ellipse(RenderPkgNamespaces renderns,
java.lang.String id,
RelAbsVector cx,
RelAbsVector cy,
RelAbsVector rx,
RelAbsVector ry)
Constructor with id, 2D center and radii.
|
Ellipse(RenderPkgNamespaces renderns,
java.lang.String id,
RelAbsVector cx,
RelAbsVector cy,
RelAbsVector cz,
RelAbsVector rx,
RelAbsVector ry)
Constructor with id, 3D center and radii.
|
Ellipse(XMLNode node)
Creates a new
RadialGradient object from the given XMLNode object. |
Ellipse(XMLNode node,
long l2version)
Creates a new
RadialGradient object from the given XMLNode object. |
Event(Event orig)
Copy constructor; creates a copy of this
Event . |
Event(long level,
long version)
|
Event(SBMLNamespaces sbmlns)
|
EventAssignment(EventAssignment orig)
Copy constructor; creates a copy of this
EventAssignment . |
EventAssignment(long level,
long version)
|
EventAssignment(SBMLNamespaces sbmlns)
|
ExternalModelDefinition()
Creates a new
ExternalModelDefinition with the given level, version, and
package version. |
ExternalModelDefinition(CompPkgNamespaces compns)
Creates a new
ExternalModelDefinition with the given CompPkgNamespaces
object. |
ExternalModelDefinition(ExternalModelDefinition source)
Copy constructor.
|
ExternalModelDefinition(long level)
Creates a new
ExternalModelDefinition with the given level, version, and
package version. |
ExternalModelDefinition(long level,
long version)
Creates a new
ExternalModelDefinition with the given level, version, and
package version. |
ExternalModelDefinition(long level,
long version,
long pkgVersion)
Creates a new
ExternalModelDefinition with the given level, version, and
package version. |
FbcAnd()
Creates a new
FbcAnd with the given SBML Level, Version, and
“fbc”package version. |
FbcAnd(FbcAnd orig)
Copy constructor for
FbcAnd . |
FbcAnd(FbcPkgNamespaces fbcns)
Creates a new
FbcAnd with the given FbcPkgNamespaces object. |
FbcAnd(long level)
Creates a new
FbcAnd with the given SBML Level, Version, and
“fbc”package version. |
FbcAnd(long level,
long version)
Creates a new
FbcAnd with the given SBML Level, Version, and
“fbc”package version. |
FbcAnd(long level,
long version,
long pkgVersion)
Creates a new
FbcAnd with the given SBML Level, Version, and
“fbc”package version. |
FbcAssociation()
Creates a new
FbcAssociation with the given SBML Level, Version, and
“fbc”package version. |
FbcAssociation(FbcAssociation orig)
Copy constructor for
FbcAssociation . |
FbcAssociation(FbcPkgNamespaces fbcns)
Creates a new
FbcAssociation with the given FbcPkgNamespaces object. |
FbcAssociation(long level)
Creates a new
FbcAssociation with the given SBML Level, Version, and
“fbc”package version. |
FbcAssociation(long level,
long version)
Creates a new
FbcAssociation with the given SBML Level, Version, and
“fbc”package version. |
FbcAssociation(long level,
long version,
long pkgVersion)
Creates a new
FbcAssociation with the given SBML Level, Version, and
“fbc”package version. |
FbcOr()
Creates a new
FbcOr with the given SBML Level, Version, and
“fbc”package version. |
FbcOr(FbcOr orig)
Copy constructor for
FbcOr . |
FbcOr(FbcPkgNamespaces fbcns)
Creates a new
FbcOr with the given FbcPkgNamespaces object. |
FbcOr(long level)
Creates a new
FbcOr with the given SBML Level, Version, and
“fbc”package version. |
FbcOr(long level,
long version)
Creates a new
FbcOr with the given SBML Level, Version, and
“fbc”package version. |
FbcOr(long level,
long version,
long pkgVersion)
Creates a new
FbcOr with the given SBML Level, Version, and
“fbc”package version. |
FbcPkgNamespaces() |
FbcPkgNamespaces(FbcPkgNamespaces orig) |
FbcPkgNamespaces(long level) |
FbcPkgNamespaces(long level,
long version) |
FbcPkgNamespaces(long level,
long version,
long pkgVersion) |
FbcPkgNamespaces(long level,
long version,
long pkgVersion,
java.lang.String prefix) |
FluxBound()
Creates a new
FbcAssociation with the given SBML Level, Version, and
“fbc”package version. |
FluxBound(FbcPkgNamespaces fbcns)
Creates a new
FluxBound with the given FbcPkgNamespaces object. |
FluxBound(FluxBound source)
Copy constructor.
|
FluxBound(long level)
Creates a new
FbcAssociation with the given SBML Level, Version, and
“fbc”package version. |
FluxBound(long level,
long version)
Creates a new
FbcAssociation with the given SBML Level, Version, and
“fbc”package version. |
FluxBound(long level,
long version,
long pkgVersion)
Creates a new
FbcAssociation with the given SBML Level, Version, and
“fbc”package version. |
FluxObjective()
Creates a new
FluxObjective with the given SBML Level, Version, and
“fbc”package version. |
FluxObjective(FbcPkgNamespaces fbcns)
Creates a new
FluxObjective with the given FbcPkgNamespaces object. |
FluxObjective(FluxObjective orig)
Copy constructor for
FluxObjective . |
FluxObjective(long level)
Creates a new
FluxObjective with the given SBML Level, Version, and
“fbc”package version. |
FluxObjective(long level,
long version)
Creates a new
FluxObjective with the given SBML Level, Version, and
“fbc”package version. |
FluxObjective(long level,
long version,
long pkgVersion)
Creates a new
FluxObjective with the given SBML Level, Version, and
“fbc”package version. |
FunctionDefinition(FunctionDefinition orig)
Copy constructor; creates a copy of this
FunctionDefinition . |
FunctionDefinition(long level,
long version)
|
FunctionDefinition(SBMLNamespaces sbmlns)
|
FunctionTerm()
Creates a new
FunctionTerm with the given level, version, and package version. |
FunctionTerm(FunctionTerm orig)
Copy constructor for
FunctionTerm . |
FunctionTerm(long level)
Creates a new
FunctionTerm with the given level, version, and package version. |
FunctionTerm(long level,
long version)
Creates a new
FunctionTerm with the given level, version, and package version. |
FunctionTerm(long level,
long version,
long pkgVersion)
Creates a new
FunctionTerm with the given level, version, and package version. |
FunctionTerm(QualPkgNamespaces qualns)
Creates a new
FunctionTerm with the given QualPkgNamespaces object. |
GeneAssociation()
|
GeneAssociation(FbcPkgNamespaces fbcns)
Creates a new
GeneAssociation with the given FbcPkgNamespaces object. |
GeneAssociation(GeneAssociation source)
Copy constructor.
|
GeneAssociation(long level)
|
GeneAssociation(long level,
long version)
|
GeneAssociation(long level,
long version,
long pkgVersion)
|
GeneAssociation(XMLNode node,
FbcPkgNamespaces fbcns)
|
GeneProduct()
Creates a new
GeneProduct with the given SBML Level, Version, and
“fbc”package version. |
GeneProduct(FbcPkgNamespaces fbcns)
Creates a new
GeneProduct with the given FbcPkgNamespaces object. |
GeneProduct(GeneProduct orig)
Copy constructor for
GeneProduct . |
GeneProduct(long level)
Creates a new
GeneProduct with the given SBML Level, Version, and
“fbc”package version. |
GeneProduct(long level,
long version)
Creates a new
GeneProduct with the given SBML Level, Version, and
“fbc”package version. |
GeneProduct(long level,
long version,
long pkgVersion)
Creates a new
GeneProduct with the given SBML Level, Version, and
“fbc”package version. |
GeneProductAssociation()
Creates a new
GeneProductAssociation with the given SBML Level, Version, and
“fbc” package version. |
GeneProductAssociation(FbcPkgNamespaces fbcns)
Creates a new
GeneProductAssociation with the given FbcPkgNamespaces
object. |
GeneProductAssociation(GeneProductAssociation orig)
Copy constructor for
GeneProductAssociation . |
GeneProductAssociation(long level)
Creates a new
GeneProductAssociation with the given SBML Level, Version, and
“fbc” package version. |
GeneProductAssociation(long level,
long version)
Creates a new
GeneProductAssociation with the given SBML Level, Version, and
“fbc” package version. |
GeneProductAssociation(long level,
long version,
long pkgVersion)
Creates a new
GeneProductAssociation with the given SBML Level, Version, and
“fbc” package version. |
GeneProductRef()
Creates a new
GeneProductRef with the given SBML Level, Version, and
“fbc”package version. |
GeneProductRef(FbcPkgNamespaces fbcns)
Creates a new
GeneProductRef with the given FbcPkgNamespaces object. |
GeneProductRef(GeneProductRef orig)
Copy constructor for
GeneProductRef . |
GeneProductRef(long level)
Creates a new
GeneProductRef with the given SBML Level, Version, and
“fbc”package version. |
GeneProductRef(long level,
long version)
Creates a new
GeneProductRef with the given SBML Level, Version, and
“fbc”package version. |
GeneProductRef(long level,
long version,
long pkgVersion)
Creates a new
GeneProductRef with the given SBML Level, Version, and
“fbc”package version. |
GeneralGlyph()
Creates a new
GeneralGlyph . |
GeneralGlyph(GeneralGlyph source)
Copy constructor.
|
GeneralGlyph(LayoutPkgNamespaces layoutns)
Creates a new
GeneralGlyph with the given LayoutPkgNamespaces object. |
GeneralGlyph(LayoutPkgNamespaces layoutns,
java.lang.String id)
Creates a glyph with the given
LayoutPkgNamespaces and id. |
GeneralGlyph(LayoutPkgNamespaces layoutns,
java.lang.String id,
java.lang.String referenceId)
Creates a glyph with the given
LayoutPkgNamespaces , id and set the id of the
associated element to the second argument. |
GeneralGlyph(long level)
Creates a new
GeneralGlyph . |
GeneralGlyph(long level,
long version)
Creates a new
GeneralGlyph . |
GeneralGlyph(long level,
long version,
long pkgVersion)
Creates a new
GeneralGlyph . |
GeneralGlyph(XMLNode node)
Creates a new
GeneralGlyph from the given XMLNode |
GeneralGlyph(XMLNode node,
long l2version)
Creates a new
GeneralGlyph from the given XMLNode |
GlobalRenderInformation()
Creates a new
GlobalRenderInformation object with the given SBML level
and SBML version. |
GlobalRenderInformation(long level)
Creates a new
GlobalRenderInformation object with the given SBML level
and SBML version. |
GlobalRenderInformation(long level,
long version)
Creates a new
GlobalRenderInformation object with the given SBML level
and SBML version. |
GlobalRenderInformation(long level,
long version,
long pkgVersion)
Creates a new
GlobalRenderInformation object with the given SBML level
and SBML version. |
GlobalRenderInformation(RenderPkgNamespaces renderns)
Creates a new
GlobalRenderInformation object with the given SBMLNamespaces . |
GlobalRenderInformation(RenderPkgNamespaces renderns,
java.lang.String id)
Constructor which creates a
GlobalRenderInformation with the given id
and all lists empty. |
GlobalStyle()
Creates a new
GlobalStyle object with the given SBML level
and SBML version. |
GlobalStyle(long level)
Creates a new
GlobalStyle object with the given SBML level
and SBML version. |
GlobalStyle(long level,
long version)
Creates a new
GlobalStyle object with the given SBML level
and SBML version. |
GlobalStyle(long level,
long version,
long pkgVersion)
Creates a new
GlobalStyle object with the given SBML level
and SBML version. |
GlobalStyle(RenderPkgNamespaces renderns)
Creates a new
GlobalStyle object with the given SBMLNamespaces . |
GlobalStyle(RenderPkgNamespaces renderns,
java.lang.String id)
Constructor which creates a
GlobalStyle with the given id
and all lists empty. |
GlobalStyle(XMLNode node)
Creates a new
GlobalStyle object from the given XMLNode object. |
GlobalStyle(XMLNode node,
long l2version)
Creates a new
GlobalStyle object from the given XMLNode object. |
GradientStop()
Creates a new
GradientStop object with the given SBML level
and SBML version. |
GradientStop(long level)
Creates a new
GradientStop object with the given SBML level
and SBML version. |
GradientStop(long level,
long version)
Creates a new
GradientStop object with the given SBML level
and SBML version. |
GradientStop(long level,
long version,
long pkgVersion)
Creates a new
GradientStop object with the given SBML level
and SBML version. |
GradientStop(RenderPkgNamespaces renderns)
Creates a new
GradientStop object with the given SBMLNamespaces . |
GradientStop(XMLNode node)
Creates a new
GradientStop object from the given XMLNode object. |
GradientStop(XMLNode node,
long l2version)
Creates a new
GradientStop object from the given XMLNode object. |
GraphicalObject()
Creates a new
GraphicalObject . |
GraphicalObject(GraphicalObject source)
Copy constructor.
|
GraphicalObject(LayoutPkgNamespaces layoutns)
Creates a new
GraphicalObject with the given LayoutPkgNamespaces |
GraphicalObject(LayoutPkgNamespaces layoutns,
java.lang.String id)
Creates a new
GraphicalObject with the given id . |
GraphicalObject(LayoutPkgNamespaces layoutns,
java.lang.String id,
BoundingBox bb)
Creates a new
GraphicalObject with the given id and 3D coordinates for
the bounding box. |
GraphicalObject(LayoutPkgNamespaces layoutns,
java.lang.String id,
double x,
double y,
double w,
double h)
Creates a new
GraphicalObject with the given id and 2D coordinates for
the bounding box. |
GraphicalObject(LayoutPkgNamespaces layoutns,
java.lang.String id,
double x,
double y,
double z,
double w,
double h,
double d)
Creates a new
GraphicalObject with the given id and 3D coordinates for
the bounding box. |
GraphicalObject(LayoutPkgNamespaces layoutns,
java.lang.String id,
Point p,
Dimensions d)
Creates a new
GraphicalObject with the given id and 3D coordinates for
the bounding box. |
GraphicalObject(long level)
Creates a new
GraphicalObject . |
GraphicalObject(long level,
long version)
Creates a new
GraphicalObject . |
GraphicalObject(long level,
long version,
long pkgVersion)
Creates a new
GraphicalObject . |
GraphicalObject(XMLNode node)
Creates a new
GraphicalObject from the given XMLNode |
GraphicalObject(XMLNode node,
long l2version)
Creates a new
GraphicalObject from the given XMLNode |
Group()
Creates a new
Group using the given SBML Level, Version and
“groups” package version. |
Group(Group orig)
Copy constructor for
Group . |
Group(GroupsPkgNamespaces groupsns)
Creates a new
Group using the given GroupsPkgNamespaces object. |
Group(long level)
Creates a new
Group using the given SBML Level, Version and
“groups” package version. |
Group(long level,
long version)
Creates a new
Group using the given SBML Level, Version and
“groups” package version. |
Group(long level,
long version,
long pkgVersion)
Creates a new
Group using the given SBML Level, Version and
“groups” package version. |
GroupsPkgNamespaces() |
GroupsPkgNamespaces(GroupsPkgNamespaces orig) |
GroupsPkgNamespaces(long level) |
GroupsPkgNamespaces(long level,
long version) |
GroupsPkgNamespaces(long level,
long version,
long pkgVersion) |
GroupsPkgNamespaces(long level,
long version,
long pkgVersion,
java.lang.String prefix) |
Image()
Creates a new
Image object with the given SBML level
and SBML version. |
Image(long level)
Creates a new
Image object with the given SBML level
and SBML version. |
Image(long level,
long version)
Creates a new
Image object with the given SBML level
and SBML version. |
Image(long level,
long version,
long pkgVersion)
Creates a new
Image object with the given SBML level
and SBML version. |
Image(RenderPkgNamespaces renderns)
Creates a new
Image object with the given SBMLNamespaces . |
Image(RenderPkgNamespaces renderns,
java.lang.String id)
Instantiates an
Image object with the given id . |
Image(XMLNode node)
|
Image(XMLNode node,
long l2version)
|
InitialAssignment(InitialAssignment orig)
Copy constructor; creates a copy of this
InitialAssignment . |
InitialAssignment(long level,
long version)
|
InitialAssignment(SBMLNamespaces sbmlns)
|
Input()
Creates a new
Input with the given level, version, and package version. |
Input(Input orig)
Copy constructor for
Input . |
Input(long level)
Creates a new
Input with the given level, version, and package version. |
Input(long level,
long version)
Creates a new
Input with the given level, version, and package version. |
Input(long level,
long version,
long pkgVersion)
Creates a new
Input with the given level, version, and package version. |
Input(QualPkgNamespaces qualns)
Creates a new
Input with the given QualPkgNamespaces object. |
KineticLaw(KineticLaw orig)
Copy constructor; creates a copy of this
KineticLaw . |
KineticLaw(long level,
long version)
|
KineticLaw(SBMLNamespaces sbmlns)
|
Layout()
Creates a new
Layout with the given level, version, and package version. |
Layout(Layout source)
Copy constructor.
|
Layout(LayoutPkgNamespaces layoutns)
Creates a new
Layout with the given LayoutPkgNamespaces object. |
Layout(LayoutPkgNamespaces layoutns,
java.lang.String id,
Dimensions dimensions)
Creates a new
Layout with the given id and dimensions. |
Layout(long level)
Creates a new
Layout with the given level, version, and package version. |
Layout(long level,
long version)
Creates a new
Layout with the given level, version, and package version. |
Layout(long level,
long version,
long pkgVersion)
Creates a new
Layout with the given level, version, and package version. |
Layout(XMLNode node)
|
Layout(XMLNode node,
long l2version)
|
LayoutPkgNamespaces() |
LayoutPkgNamespaces(LayoutPkgNamespaces orig) |
LayoutPkgNamespaces(long level) |
LayoutPkgNamespaces(long level,
long version) |
LayoutPkgNamespaces(long level,
long version,
long pkgVersion) |
LayoutPkgNamespaces(long level,
long version,
long pkgVersion,
java.lang.String prefix) |
LinearGradient()
Creates a new
LinearGradient object with the given SBML level
and SBML version. |
LinearGradient(long level)
Creates a new
LinearGradient object with the given SBML level
and SBML version. |
LinearGradient(long level,
long version)
Creates a new
LinearGradient object with the given SBML level
and SBML version. |
LinearGradient(long level,
long version,
long pkgVersion)
Creates a new
LinearGradient object with the given SBML level
and SBML version. |
LinearGradient(RenderPkgNamespaces renderns)
Creates a new
LinearGradient object with the given SBMLNamespaces . |
LinearGradient(RenderPkgNamespaces renderns,
java.lang.String id)
Constructor which creates a
LinearGradient with no gradient stops. |
LinearGradient(XMLNode node)
Creates a new
LinearGradient object from the given XMLNode object. |
LinearGradient(XMLNode node,
long l2version)
Creates a new
LinearGradient object from the given XMLNode object. |
LineEnding()
Creates a new
LineEnding object with the given SBML level
and SBML version. |
LineEnding(LineEnding other)
Copy constructor.
|
LineEnding(long level)
Creates a new
LineEnding object with the given SBML level
and SBML version. |
LineEnding(long level,
long version)
Creates a new
LineEnding object with the given SBML level
and SBML version. |
LineEnding(long level,
long version,
long pkgVersion)
Creates a new
LineEnding object with the given SBML level
and SBML version. |
LineEnding(RenderPkgNamespaces renderns)
Creates a new
LineEnding object with the given SBMLNamespaces . |
LineEnding(RenderPkgNamespaces renderns,
java.lang.String id)
Constructor which creates a
LineEnding with an empty group object,
and a viewport with a size of 0. |
LineEnding(XMLNode node,
long l2version)
Creates a new
LineEnding object from the given XMLNode object. |
LineSegment()
Creates a line segment with the given SBML level, version, and package version
and both points set to (0.0,0.0,0.0)
|
LineSegment(LayoutPkgNamespaces layoutns)
Creates a line segment with the
LayoutPkgNamespaces and both points set to (0.0,0.0,0.0) |
LineSegment(LayoutPkgNamespaces layoutns,
double x1,
double y1,
double x2,
double y2)
Creates a new line segment with the given 2D coordinates.
|
LineSegment(LayoutPkgNamespaces layoutns,
double x1,
double y1,
double z1,
double x2,
double y2,
double z2)
Creates a new line segment with the given 3D coordinates.
|
LineSegment(LayoutPkgNamespaces layoutns,
Point start,
Point end)
Creates a new line segment with the two given points.
|
LineSegment(LineSegment orig)
Copy constructor.
|
LineSegment(long level)
Creates a line segment with the given SBML level, version, and package version
and both points set to (0.0,0.0,0.0)
|
LineSegment(long level,
long version)
Creates a line segment with the given SBML level, version, and package version
and both points set to (0.0,0.0,0.0)
|
LineSegment(long level,
long version,
long pkgVersion)
Creates a line segment with the given SBML level, version, and package version
and both points set to (0.0,0.0,0.0)
|
LineSegment(XMLNode node)
Creates a new
LineSegment from the given XMLNode |
LineSegment(XMLNode node,
long l2version)
Creates a new
LineSegment from the given XMLNode |
ListOf()
Creates a new
ListOf object. |
ListOf(ListOf orig)
Copy constructor; creates a copy of this
ListOf . |
ListOf(long level)
Creates a new
ListOf object. |
ListOf(long level,
long version)
Creates a new
ListOf object. |
ListOf(SBMLNamespaces sbmlns)
Creates a new
ListOf with a given SBMLNamespaces object. |
ListOfColorDefinitions()
Constructor which instantiates an empty
ListOfColorDefinitions object. |
ListOfColorDefinitions(ListOfColorDefinitions source)
Copy constructor.
|
ListOfColorDefinitions(long level)
Constructor which instantiates an empty
ListOfColorDefinitions object. |
ListOfColorDefinitions(long level,
long version)
Constructor which instantiates an empty
ListOfColorDefinitions object. |
ListOfColorDefinitions(long level,
long version,
long pkgVersion)
Constructor which instantiates an empty
ListOfColorDefinitions object. |
ListOfColorDefinitions(RenderPkgNamespaces renderns)
Ctor.
|
ListOfColorDefinitions(XMLNode node)
Creates a new
ListOfColorDefinitions object from the given XMLNode object. |
ListOfCompartmentGlyphs()
Ctor.
|
ListOfCompartmentGlyphs(LayoutPkgNamespaces layoutns)
Ctor.
|
ListOfCompartmentGlyphs(long level)
Ctor.
|
ListOfCompartmentGlyphs(long level,
long version)
Ctor.
|
ListOfCompartmentGlyphs(long level,
long version,
long pkgVersion)
Ctor.
|
ListOfCompartments(long level,
long version)
Creates a new
ListOfCompartments object. |
ListOfCompartments(SBMLNamespaces sbmlns)
Creates a new
ListOfCompartments object. |
ListOfCompartmentTypes(long level,
long version)
Creates a new
ListOfCompartmentTypes object. |
ListOfCompartmentTypes(SBMLNamespaces sbmlns)
Creates a new
ListOfCompartmentTypes object. |
ListOfConstraints(long level,
long version)
Creates a new
ListOfConstraints object. |
ListOfConstraints(SBMLNamespaces sbmlns)
Creates a new
ListOfConstraints object. |
ListOfCurveElements()
Constructor which instantiates an empty
ListOfCurveElements object. |
ListOfCurveElements(ListOfCurveElements source)
Copy constructor for
ListOfCurveElements objects. |
ListOfCurveElements(long level)
Constructor which instantiates an empty
ListOfCurveElements object. |
ListOfCurveElements(long level,
long version)
Constructor which instantiates an empty
ListOfCurveElements object. |
ListOfCurveElements(long level,
long version,
long pkgVersion)
Constructor which instantiates an empty
ListOfCurveElements object. |
ListOfCurveElements(RenderPkgNamespaces renderns)
Ctor.
|
ListOfCurveElements(XMLNode node)
Creates a new
ListOfCurveElements object from the given XMLNode object. |
ListOfCurveElements(XMLNode node,
long l2version)
Creates a new
ListOfCurveElements object from the given XMLNode object. |
ListOfDeletions()
Creates a new
ListOfDeletions with the given level, version, and package
version. |
ListOfDeletions(CompPkgNamespaces compns)
Creates a new
ListOfDeletions with the given CompPkgNamespaces object. |
ListOfDeletions(long level)
Creates a new
ListOfDeletions with the given level, version, and package
version. |
ListOfDeletions(long level,
long version)
Creates a new
ListOfDeletions with the given level, version, and package
version. |
ListOfDeletions(long level,
long version,
long pkgVersion)
Creates a new
ListOfDeletions with the given level, version, and package
version. |
ListOfDrawables()
Constructor which instantiates an empty
ListOfDrawables object. |
ListOfDrawables(ListOfDrawables source)
Copy constructor.
|
ListOfDrawables(long level)
Constructor which instantiates an empty
ListOfDrawables object. |
ListOfDrawables(long level,
long version)
Constructor which instantiates an empty
ListOfDrawables object. |
ListOfDrawables(long level,
long version,
long pkgVersion)
Constructor which instantiates an empty
ListOfDrawables object. |
ListOfDrawables(RenderPkgNamespaces renderns)
Ctor.
|
ListOfEventAssignments(long level,
long version)
Creates a new
ListOfEventAssignments object. |
ListOfEventAssignments(SBMLNamespaces sbmlns)
Creates a new
ListOfEventAssignments object. |
ListOfEvents(long level,
long version)
Creates a new
ListOfEvents object. |
ListOfEvents(SBMLNamespaces sbmlns)
Creates a new
ListOfEvents object. |
ListOfExternalModelDefinitions()
Creates a new
ListOfExternalModelDefinitions with the given level,
version, and package version. |
ListOfExternalModelDefinitions(CompPkgNamespaces compns)
Creates a new
ListOfExternalModelDefinitions with the given
CompPkgNamespaces object. |
ListOfExternalModelDefinitions(long level)
Creates a new
ListOfExternalModelDefinitions with the given level,
version, and package version. |
ListOfExternalModelDefinitions(long level,
long version)
Creates a new
ListOfExternalModelDefinitions with the given level,
version, and package version. |
ListOfExternalModelDefinitions(long level,
long version,
long pkgVersion)
Creates a new
ListOfExternalModelDefinitions with the given level,
version, and package version. |
ListOfFbcAssociations()
Creates a new
ListOfFbcAssociations with the given SBML Level, Version,
and “fbc”package version. |
ListOfFbcAssociations(FbcPkgNamespaces fbcns)
Creates a new
ListOfFbcAssociations with the given FbcPkgNamespaces
object. |
ListOfFbcAssociations(long level)
Creates a new
ListOfFbcAssociations with the given SBML Level, Version,
and “fbc”package version. |
ListOfFbcAssociations(long level,
long version)
Creates a new
ListOfFbcAssociations with the given SBML Level, Version,
and “fbc”package version. |
ListOfFbcAssociations(long level,
long version,
long pkgVersion)
Creates a new
ListOfFbcAssociations with the given SBML Level, Version,
and “fbc”package version. |
ListOfFluxBounds()
Creates a new
ListOfFluxBounds with the given level, version, and package version. |
ListOfFluxBounds(FbcPkgNamespaces fbcns)
Creates a new
ListOfFluxBounds with the given FbcPkgNamespaces object. |
ListOfFluxBounds(long level)
Creates a new
ListOfFluxBounds with the given level, version, and package version. |
ListOfFluxBounds(long level,
long version)
Creates a new
ListOfFluxBounds with the given level, version, and package version. |
ListOfFluxBounds(long level,
long version,
long pkgVersion)
Creates a new
ListOfFluxBounds with the given level, version, and package version. |
ListOfFluxObjectives()
Creates a new
ListOfFluxObjectives with the given level, version, and package version. |
ListOfFluxObjectives(FbcPkgNamespaces fbcns)
Creates a new
ListOfFluxObjectives with the given FbcPkgNamespaces object. |
ListOfFluxObjectives(long level)
Creates a new
ListOfFluxObjectives with the given level, version, and package version. |
ListOfFluxObjectives(long level,
long version)
Creates a new
ListOfFluxObjectives with the given level, version, and package version. |
ListOfFluxObjectives(long level,
long version,
long pkgVersion)
Creates a new
ListOfFluxObjectives with the given level, version, and package version. |
ListOfFunctionDefinitions(long level,
long version)
Creates a new
ListOfFunctionDefinitions object. |
ListOfFunctionDefinitions(SBMLNamespaces sbmlns)
Creates a new
ListOfFunctionDefinitions object. |
ListOfFunctionTerms()
Creates a new
ListOfFunctionTerms with the given level, version, and package version. |
ListOfFunctionTerms(ListOfFunctionTerms orig) |
ListOfFunctionTerms(long level)
Creates a new
ListOfFunctionTerms with the given level, version, and package version. |
ListOfFunctionTerms(long level,
long version)
Creates a new
ListOfFunctionTerms with the given level, version, and package version. |
ListOfFunctionTerms(long level,
long version,
long pkgVersion)
Creates a new
ListOfFunctionTerms with the given level, version, and package version. |
ListOfFunctionTerms(QualPkgNamespaces qualns)
Creates a new
ListOfFunctionTerms with the given QualPkgNamespaces object. |
ListOfGeneAssociations()
Creates a new
ListOfGeneAssociations with the given level, version, and package version. |
ListOfGeneAssociations(FbcPkgNamespaces fbcns)
Creates a new
ListOfGeneAssociations with the given FbcPkgNamespaces object. |
ListOfGeneAssociations(long level)
Creates a new
ListOfGeneAssociations with the given level, version, and package version. |
ListOfGeneAssociations(long level,
long version)
Creates a new
ListOfGeneAssociations with the given level, version, and package version. |
ListOfGeneAssociations(long level,
long version,
long pkgVersion)
Creates a new
ListOfGeneAssociations with the given level, version, and package version. |
ListOfGeneProducts()
Creates a new
GeneProduct with the given SBML Level, Version, and
“fbc”package version. |
ListOfGeneProducts(FbcPkgNamespaces fbcns)
Creates a new
ListOfGeneProducts with the given FbcPkgNamespaces object. |
ListOfGeneProducts(long level)
Creates a new
GeneProduct with the given SBML Level, Version, and
“fbc”package version. |
ListOfGeneProducts(long level,
long version)
Creates a new
GeneProduct with the given SBML Level, Version, and
“fbc”package version. |
ListOfGeneProducts(long level,
long version,
long pkgVersion)
Creates a new
GeneProduct with the given SBML Level, Version, and
“fbc”package version. |
ListOfGlobalRenderInformation()
Constructor which instantiates an empty
ListOfGlobalRenderInformation object. |
ListOfGlobalRenderInformation(ListOfGlobalRenderInformation source)
Copy constructor for
ListOfGlobalRenderInformation objects. |
ListOfGlobalRenderInformation(long level)
Constructor which instantiates an empty
ListOfGlobalRenderInformation object. |
ListOfGlobalRenderInformation(long level,
long version)
Constructor which instantiates an empty
ListOfGlobalRenderInformation object. |
ListOfGlobalRenderInformation(long level,
long version,
long pkgVersion)
Constructor which instantiates an empty
ListOfGlobalRenderInformation object. |
ListOfGlobalRenderInformation(RenderPkgNamespaces renderns)
Ctor.
|
ListOfGlobalStyles()
Constructor which instantiates an empty
ListOfGlobalStyles object. |
ListOfGlobalStyles(ListOfGlobalStyles source)
Copy constructor for
ListOfGlobalStyles objects. |
ListOfGlobalStyles(long level)
Constructor which instantiates an empty
ListOfGlobalStyles object. |
ListOfGlobalStyles(long level,
long version)
Constructor which instantiates an empty
ListOfGlobalStyles object. |
ListOfGlobalStyles(long level,
long version,
long pkgVersion)
Constructor which instantiates an empty
ListOfGlobalStyles object. |
ListOfGlobalStyles(RenderPkgNamespaces renderns)
Ctor.
|
ListOfGlobalStyles(XMLNode node)
Creates a new
ListOfGlobalStyles object from the given XMLNode object. |
ListOfGradientDefinitions()
Constructor which instantiates an empty
ListOfGradientDefinitions object. |
ListOfGradientDefinitions(ListOfGradientDefinitions source)
Copy constructor.
|
ListOfGradientDefinitions(long level)
Constructor which instantiates an empty
ListOfGradientDefinitions object. |
ListOfGradientDefinitions(long level,
long version)
Constructor which instantiates an empty
ListOfGradientDefinitions object. |
ListOfGradientDefinitions(long level,
long version,
long pkgVersion)
Constructor which instantiates an empty
ListOfGradientDefinitions object. |
ListOfGradientDefinitions(RenderPkgNamespaces renderns)
Ctor.
|
ListOfGradientDefinitions(XMLNode node)
Creates a new
ListOfGradientDefinitions object from the given XMLNode object. |
ListOfGradientDefinitions(XMLNode node,
long l2version)
Creates a new
ListOfGradientDefinitions object from the given XMLNode object. |
ListOfGradientStops()
Constructor which instantiated an empty
ListOfGradientStops object. |
ListOfGradientStops(ListOfGradientStops source)
Copy constructor; creates a copy of the given
ListOfGradientStops object. |
ListOfGradientStops(long level)
Constructor which instantiated an empty
ListOfGradientStops object. |
ListOfGradientStops(long level,
long version)
Constructor which instantiated an empty
ListOfGradientStops object. |
ListOfGradientStops(long level,
long version,
long pkgVersion)
Constructor which instantiated an empty
ListOfGradientStops object. |
ListOfGradientStops(RenderPkgNamespaces renderns)
Ctor.
|
ListOfGradientStops(XMLNode node)
Creates a new
ListOfGradientStops object from the given XMLNode object. |
ListOfGradientStops(XMLNode node,
long l2version)
Creates a new
ListOfGradientStops object from the given XMLNode object. |
ListOfGraphicalObjects()
Ctor.
|
ListOfGraphicalObjects(LayoutPkgNamespaces layoutns)
Ctor.
|
ListOfGraphicalObjects(long level)
Ctor.
|
ListOfGraphicalObjects(long level,
long version)
Ctor.
|
ListOfGraphicalObjects(long level,
long version,
long pkgVersion)
Ctor.
|
ListOfGroups()
Creates a new
ListOfGroups using the given SBML Level, Version and
“groups” package version. |
ListOfGroups(GroupsPkgNamespaces groupsns)
Creates a new
ListOfGroups using the given GroupsPkgNamespaces object. |
ListOfGroups(ListOfGroups orig)
Copy constructor for
ListOfGroups . |
ListOfGroups(long level)
Creates a new
ListOfGroups using the given SBML Level, Version and
“groups” package version. |
ListOfGroups(long level,
long version)
Creates a new
ListOfGroups using the given SBML Level, Version and
“groups” package version. |
ListOfGroups(long level,
long version,
long pkgVersion)
Creates a new
ListOfGroups using the given SBML Level, Version and
“groups” package version. |
ListOfInitialAssignments(long level,
long version)
Creates a new
ListOfInitialAssignments object. |
ListOfInitialAssignments(SBMLNamespaces sbmlns)
Creates a new
ListOfInitialAssignments object. |
ListOfInputs()
Creates a new
ListOfInputs with the given level, version, and package version. |
ListOfInputs(long level)
Creates a new
ListOfInputs with the given level, version, and package version. |
ListOfInputs(long level,
long version)
Creates a new
ListOfInputs with the given level, version, and package version. |
ListOfInputs(long level,
long version,
long pkgVersion)
Creates a new
ListOfInputs with the given level, version, and package version. |
ListOfInputs(QualPkgNamespaces qualns)
Creates a new
ListOfInputs with the given QualPkgNamespaces object. |
ListOfLayouts()
Ctor.
|
ListOfLayouts(LayoutPkgNamespaces layoutns)
Ctor.
|
ListOfLayouts(long level)
Ctor.
|
ListOfLayouts(long level,
long version)
Ctor.
|
ListOfLayouts(long level,
long version,
long pkgVersion)
Ctor.
|
ListOfLineEndings()
Constructor which instantiates an empty
ListOfLineEndings object. |
ListOfLineEndings(ListOfLineEndings source)
Copy constructor.
|
ListOfLineEndings(long level)
Constructor which instantiates an empty
ListOfLineEndings object. |
ListOfLineEndings(long level,
long version)
Constructor which instantiates an empty
ListOfLineEndings object. |
ListOfLineEndings(long level,
long version,
long pkgVersion)
Constructor which instantiates an empty
ListOfLineEndings object. |
ListOfLineEndings(RenderPkgNamespaces renderns)
Ctor.
|
ListOfLineEndings(XMLNode node)
Creates a new
ListOfLineEndings object from the given XMLNode object. |
ListOfLineEndings(XMLNode node,
long l2version)
Creates a new
ListOfLineEndings object from the given XMLNode object. |
ListOfLineSegments()
Ctor.
|
ListOfLineSegments(LayoutPkgNamespaces layoutns)
Ctor.
|
ListOfLineSegments(long level)
Ctor.
|
ListOfLineSegments(long level,
long version)
Ctor.
|
ListOfLineSegments(long level,
long version,
long pkgVersion)
Ctor.
|
ListOfLocalParameters(long level,
long version)
Creates a new
ListOfLocalParameters object. |
ListOfLocalParameters(SBMLNamespaces sbmlns)
Creates a new
ListOfLocalParameters object. |
ListOfLocalRenderInformation()
Constructor which instantiates an empty
ListOfLocalRenderInformation object. |
ListOfLocalRenderInformation(ListOfLocalRenderInformation source)
Copy constructor for
ListOfLocalRenderInformation objects. |
ListOfLocalRenderInformation(long level)
Constructor which instantiates an empty
ListOfLocalRenderInformation object. |
ListOfLocalRenderInformation(long level,
long version)
Constructor which instantiates an empty
ListOfLocalRenderInformation object. |
ListOfLocalRenderInformation(long level,
long version,
long pkgVersion)
Constructor which instantiates an empty
ListOfLocalRenderInformation object. |
ListOfLocalRenderInformation(RenderPkgNamespaces renderns)
Ctor.
|
ListOfLocalStyles()
Constructor which instantiates an empty
ListOfLocalStyles object. |
ListOfLocalStyles(ListOfLocalStyles source)
Copy constructor for
ListOfLocalStyles objects. |
ListOfLocalStyles(long level)
Constructor which instantiates an empty
ListOfLocalStyles object. |
ListOfLocalStyles(long level,
long version)
Constructor which instantiates an empty
ListOfLocalStyles object. |
ListOfLocalStyles(long level,
long version,
long pkgVersion)
Constructor which instantiates an empty
ListOfLocalStyles object. |
ListOfLocalStyles(RenderPkgNamespaces renderns)
Ctor.
|
ListOfLocalStyles(XMLNode node)
Creates a new
ListOfLocalStyles object from the given XMLNode object. |
ListOfMembers()
Creates a new
ListOfMembers using the given SBML Level, Version and
“groups” package version. |
ListOfMembers(GroupsPkgNamespaces groupsns)
Creates a new
ListOfMembers using the given GroupsPkgNamespaces object. |
ListOfMembers(ListOfMembers orig)
Copy constructor for
ListOfMembers . |
ListOfMembers(long level)
Creates a new
ListOfMembers using the given SBML Level, Version and
“groups” package version. |
ListOfMembers(long level,
long version)
Creates a new
ListOfMembers using the given SBML Level, Version and
“groups” package version. |
ListOfMembers(long level,
long version,
long pkgVersion)
Creates a new
ListOfMembers using the given SBML Level, Version and
“groups” package version. |
ListOfModelDefinitions()
Creates a new
ListOfModelDefinitions with the given level, version, and
package version. |
ListOfModelDefinitions(CompPkgNamespaces compns)
Creates a new
ListOfModelDefinitions with the given CompPkgNamespaces
object. |
ListOfModelDefinitions(long level)
Creates a new
ListOfModelDefinitions with the given level, version, and
package version. |
ListOfModelDefinitions(long level,
long version)
Creates a new
ListOfModelDefinitions with the given level, version, and
package version. |
ListOfModelDefinitions(long level,
long version,
long pkgVersion)
Creates a new
ListOfModelDefinitions with the given level, version, and
package version. |
ListOfObjectives()
Creates a new
ListOfObjectives with the given SBML Level, Version, and
“fbc”package version. |
ListOfObjectives(FbcPkgNamespaces fbcns)
Creates a new
ListOfObjectives with the given FbcPkgNamespaces object. |
ListOfObjectives(ListOfObjectives other)
Copy Constructor.
|
ListOfObjectives(long level)
Creates a new
ListOfObjectives with the given SBML Level, Version, and
“fbc”package version. |
ListOfObjectives(long level,
long version)
Creates a new
ListOfObjectives with the given SBML Level, Version, and
“fbc”package version. |
ListOfObjectives(long level,
long version,
long pkgVersion)
Creates a new
ListOfObjectives with the given SBML Level, Version, and
“fbc”package version. |
ListOfOutputs()
Creates a new
ListOfOutputs with the given level, version, and package version. |
ListOfOutputs(long level)
Creates a new
ListOfOutputs with the given level, version, and package version. |
ListOfOutputs(long level,
long version)
Creates a new
ListOfOutputs with the given level, version, and package version. |
ListOfOutputs(long level,
long version,
long pkgVersion)
Creates a new
ListOfOutputs with the given level, version, and package version. |
ListOfOutputs(QualPkgNamespaces qualns)
Creates a new
ListOfOutputs with the given QualPkgNamespaces object. |
ListOfParameters(long level,
long version)
Creates a new
ListOfParameters object. |
ListOfParameters(SBMLNamespaces sbmlns)
Creates a new
ListOfParameters object. |
ListOfPorts()
Creates a new
ListOfPorts with the given level, version, and package version. |
ListOfPorts(CompPkgNamespaces compns)
Creates a new
ListOfPorts with the given CompPkgNamespaces object. |
ListOfPorts(long level)
Creates a new
ListOfPorts with the given level, version, and package version. |
ListOfPorts(long level,
long version)
Creates a new
ListOfPorts with the given level, version, and package version. |
ListOfPorts(long level,
long version,
long pkgVersion)
Creates a new
ListOfPorts with the given level, version, and package version. |
ListOfQualitativeSpecies()
Creates a new
ListOfQualitativeSpecies with the given level, version, and package version. |
ListOfQualitativeSpecies(long level)
Creates a new
ListOfQualitativeSpecies with the given level, version, and package version. |
ListOfQualitativeSpecies(long level,
long version)
Creates a new
ListOfQualitativeSpecies with the given level, version, and package version. |
ListOfQualitativeSpecies(long level,
long version,
long pkgVersion)
Creates a new
ListOfQualitativeSpecies with the given level, version, and package version. |
ListOfQualitativeSpecies(QualPkgNamespaces qualns)
Creates a new
ListOfQualitativeSpecies with the given QualPkgNamespaces object. |
ListOfReactionGlyphs()
Ctor.
|
ListOfReactionGlyphs(LayoutPkgNamespaces layoutns)
Ctor.
|
ListOfReactionGlyphs(long level)
Ctor.
|
ListOfReactionGlyphs(long level,
long version)
Ctor.
|
ListOfReactionGlyphs(long level,
long version,
long pkgVersion)
Ctor.
|
ListOfReactions(long level,
long version)
Creates a new
ListOfReactions object. |
ListOfReactions(SBMLNamespaces sbmlns)
Creates a new
ListOfReactions object. |
ListOfReferenceGlyphs()
Ctor.
|
ListOfReferenceGlyphs(LayoutPkgNamespaces layoutns)
Ctor.
|
ListOfReferenceGlyphs(long level)
Ctor.
|
ListOfReferenceGlyphs(long level,
long version)
Ctor.
|
ListOfReferenceGlyphs(long level,
long version,
long pkgVersion)
Ctor.
|
ListOfReplacedElements()
Creates a new
ListOfReplacedElements with the given level, version, and
package version. |
ListOfReplacedElements(CompPkgNamespaces compns)
Creates a new
ListOfReplacedElements with the given CompPkgNamespaces
object. |
ListOfReplacedElements(long level)
Creates a new
ListOfReplacedElements with the given level, version, and
package version. |
ListOfReplacedElements(long level,
long version)
Creates a new
ListOfReplacedElements with the given level, version, and
package version. |
ListOfReplacedElements(long level,
long version,
long pkgVersion)
Creates a new
ListOfReplacedElements with the given level, version, and
package version. |
ListOfRules(long level,
long version)
Creates a new
ListOfRules object. |
ListOfRules(SBMLNamespaces sbmlns)
Creates a new
ListOfRules object. |
ListOfSpecies(long level,
long version)
Creates a new
ListOfSpecies object. |
ListOfSpecies(SBMLNamespaces sbmlns)
Creates a new
ListOfSpecies object. |
ListOfSpeciesGlyphs()
Ctor.
|
ListOfSpeciesGlyphs(LayoutPkgNamespaces layoutns)
Ctor.
|
ListOfSpeciesGlyphs(long level)
Ctor.
|
ListOfSpeciesGlyphs(long level,
long version)
Ctor.
|
ListOfSpeciesGlyphs(long level,
long version,
long pkgVersion)
Ctor.
|
ListOfSpeciesReferenceGlyphs()
Ctor.
|
ListOfSpeciesReferenceGlyphs(LayoutPkgNamespaces layoutns)
Ctor.
|
ListOfSpeciesReferenceGlyphs(long level)
Ctor.
|
ListOfSpeciesReferenceGlyphs(long level,
long version)
Ctor.
|
ListOfSpeciesReferenceGlyphs(long level,
long version,
long pkgVersion)
Ctor.
|
ListOfSpeciesReferences(long level,
long version)
Creates a new, empty
ListOfSpeciesReferences object. |
ListOfSpeciesReferences(SBMLNamespaces sbmlns)
Creates a new
ListOfSpeciesReferences object. |
ListOfSpeciesTypes(long level,
long version)
Creates a new
ListOfSpeciesTypes object. |
ListOfSpeciesTypes(SBMLNamespaces sbmlns)
Creates a new
ListOfSpeciesTypes object. |
ListOfSubmodels()
Creates a new
ListOfSubmodels with the given level, version, and package
version. |
ListOfSubmodels(CompPkgNamespaces compns)
Creates a new
ListOfSubmodels with the given CompPkgNamespaces object. |
ListOfSubmodels(long level)
Creates a new
ListOfSubmodels with the given level, version, and package
version. |
ListOfSubmodels(long level,
long version)
Creates a new
ListOfSubmodels with the given level, version, and package
version. |
ListOfSubmodels(long level,
long version,
long pkgVersion)
Creates a new
ListOfSubmodels with the given level, version, and package
version. |
ListOfTextGlyphs()
Ctor.
|
ListOfTextGlyphs(LayoutPkgNamespaces layoutns)
Ctor.
|
ListOfTextGlyphs(long level)
Ctor.
|
ListOfTextGlyphs(long level,
long version)
Ctor.
|
ListOfTextGlyphs(long level,
long version,
long pkgVersion)
Ctor.
|
ListOfTransitions()
Creates a new
ListOfTransitions with the given level, version, and package version. |
ListOfTransitions(long level)
Creates a new
ListOfTransitions with the given level, version, and package version. |
ListOfTransitions(long level,
long version)
Creates a new
ListOfTransitions with the given level, version, and package version. |
ListOfTransitions(long level,
long version,
long pkgVersion)
Creates a new
ListOfTransitions with the given level, version, and package version. |
ListOfTransitions(QualPkgNamespaces qualns)
Creates a new
ListOfTransitions with the given QualPkgNamespaces object. |
ListOfUnitDefinitions(long level,
long version)
Creates a new
ListOfUnitDefinitions object. |
ListOfUnitDefinitions(SBMLNamespaces sbmlns)
Creates a new
ListOfUnitDefinitions object. |
ListOfUnits(long level,
long version)
Creates a new
ListOfUnits object. |
ListOfUnits(SBMLNamespaces sbmlns)
Creates a new
ListOfUnits object. |
LocalParameter(LocalParameter orig)
Copy constructor; creates a copy of a given
LocalParameter object. |
LocalParameter(long level,
long version)
|
LocalParameter(Parameter orig)
Copy constructor; creates a
LocalParameter object by copying
the attributes of a given Parameter object. |
LocalParameter(SBMLNamespaces sbmlns)
|
LocalRenderInformation()
Creates a new
LocalRenderInformation object with the given SBML level
and SBML version. |
LocalRenderInformation(long level)
Creates a new
LocalRenderInformation object with the given SBML level
and SBML version. |
LocalRenderInformation(long level,
long version)
Creates a new
LocalRenderInformation object with the given SBML level
and SBML version. |
LocalRenderInformation(long level,
long version,
long pkgVersion)
Creates a new
LocalRenderInformation object with the given SBML level
and SBML version. |
LocalRenderInformation(RenderPkgNamespaces renderns)
Creates a new
LocalRenderInformation object with the given SBMLNamespaces . |
LocalRenderInformation(RenderPkgNamespaces renderns,
java.lang.String id)
Constructor which creates a
LocalRenderInformation with the given id
and all lists empty. |
LocalStyle()
Creates a new
LocalStyle object with the given SBML level
and SBML version. |
LocalStyle(long level)
Creates a new
LocalStyle object with the given SBML level
and SBML version. |
LocalStyle(long level,
long version)
Creates a new
LocalStyle object with the given SBML level
and SBML version. |
LocalStyle(long level,
long version,
long pkgVersion)
Creates a new
LocalStyle object with the given SBML level
and SBML version. |
LocalStyle(RenderPkgNamespaces renderns)
Creates a new
LocalStyle object with the given SBMLNamespaces . |
LocalStyle(RenderPkgNamespaces renderns,
java.lang.String id)
Constructor which creates a
LocalStyle with an empty group
and empty id, role and type list. |
LocalStyle(XMLNode node)
Creates a new
LocalStyle object from the given XMLNode object. |
LocalStyle(XMLNode node,
long l2version)
Creates a new
LocalStyle object from the given XMLNode object. |
Member()
Creates a new
Member using the given SBML Level, Version and
“groups” package version. |
Member(GroupsPkgNamespaces groupsns)
Creates a new
Member using the given GroupsPkgNamespaces object. |
Member(long level)
Creates a new
Member using the given SBML Level, Version and
“groups” package version. |
Member(long level,
long version)
Creates a new
Member using the given SBML Level, Version and
“groups” package version. |
Member(long level,
long version,
long pkgVersion)
Creates a new
Member using the given SBML Level, Version and
“groups” package version. |
Member(Member orig)
Copy constructor for
Member . |
Model(long level,
long version)
|
Model(Model orig)
Copy constructor; creates a (deep) copy of the given
Model object. |
Model(SBMLNamespaces sbmlns)
|
ModelDefinition()
Creates a new
ModelDefinition with the given level, version, and package
version. |
ModelDefinition(CompPkgNamespaces compns)
Creates a new
ModelDefinition with the given CompPkgNamespaces object. |
ModelDefinition(long level)
Creates a new
ModelDefinition with the given level, version, and package
version. |
ModelDefinition(long level,
long version)
Creates a new
ModelDefinition with the given level, version, and package
version. |
ModelDefinition(long level,
long version,
long pkgVersion)
Creates a new
ModelDefinition with the given level, version, and package
version. |
ModelDefinition(Model source)
Copy constructor from base
Model object. |
ModifierSpeciesReference(long level,
long version)
|
ModifierSpeciesReference(SBMLNamespaces sbmlns)
|
Objective()
Creates a new
Objective with the given SBML Level, Version, and
“fbc”package version. |
Objective(FbcPkgNamespaces fbcns)
Creates a new
Objective with the given FbcPkgNamespaces object. |
Objective(long level)
Creates a new
Objective with the given SBML Level, Version, and
“fbc”package version. |
Objective(long level,
long version)
Creates a new
Objective with the given SBML Level, Version, and
“fbc”package version. |
Objective(long level,
long version,
long pkgVersion)
Creates a new
Objective with the given SBML Level, Version, and
“fbc”package version. |
Objective(Objective orig)
Copy constructor for
Objective . |
Output()
Creates a new
Output with the given level, version, and package version. |
Output(long level)
Creates a new
Output with the given level, version, and package version. |
Output(long level,
long version)
Creates a new
Output with the given level, version, and package version. |
Output(long level,
long version,
long pkgVersion)
Creates a new
Output with the given level, version, and package version. |
Output(Output orig)
Copy constructor for
Output . |
Output(QualPkgNamespaces qualns)
Creates a new
Output with the given QualPkgNamespaces object. |
Parameter(long level,
long version)
|
Parameter(Parameter orig)
Copy constructor; creates a copy of a
Parameter . |
Parameter(SBMLNamespaces sbmlns)
|
Point()
Creates a new point with x,y and z set to 0.0.
|
Point(LayoutPkgNamespaces layoutns)
Ctor.
|
Point(LayoutPkgNamespaces layoutns,
double x,
double y)
Creates a new point with the given coordinates.
|
Point(LayoutPkgNamespaces layoutns,
double x,
double y,
double z)
Creates a new point with the given coordinates.
|
Point(long level)
Creates a new point with x,y and z set to 0.0.
|
Point(long level,
long version)
Creates a new point with x,y and z set to 0.0.
|
Point(long level,
long version,
long pkgVersion)
Creates a new point with x,y and z set to 0.0.
|
Point(Point orig)
Copy constructor.
|
Point(XMLNode node)
|
Point(XMLNode node,
long l2version)
|
Polygon()
Creates a new
Polygon object with the given SBML level
and SBML version. |
Polygon(long level)
Creates a new
Polygon object with the given SBML level
and SBML version. |
Polygon(long level,
long version)
Creates a new
Polygon object with the given SBML level
and SBML version. |
Polygon(long level,
long version,
long pkgVersion)
Creates a new
Polygon object with the given SBML level
and SBML version. |
Polygon(RenderPkgNamespaces renderns)
Creates a new
Polygon object with the given SBMLNamespaces . |
Polygon(RenderPkgNamespaces renderns,
java.lang.String id)
Instanciates a polygon with the given
id and no elements. |
Polygon(XMLNode node)
|
Polygon(XMLNode node,
long l2version)
|
Port()
Creates a new
Port with the given level, version, and package version. |
Port(CompPkgNamespaces compns)
Creates a new
Port with the given CompPkgNamespaces object. |
Port(long level)
Creates a new
Port with the given level, version, and package version. |
Port(long level,
long version)
Creates a new
Port with the given level, version, and package version. |
Port(long level,
long version,
long pkgVersion)
Creates a new
Port with the given level, version, and package version. |
Port(Port source)
Copy constructor.
|
Priority(long level,
long version)
|
Priority(Priority orig)
Copy constructor; creates a copy of this
Priority . |
Priority(SBMLNamespaces sbmlns)
|
QualitativeSpecies()
Creates a new
QualitativeSpecies with the given level, version, and package version. |
QualitativeSpecies(long level)
Creates a new
QualitativeSpecies with the given level, version, and package version. |
QualitativeSpecies(long level,
long version)
Creates a new
QualitativeSpecies with the given level, version, and package version. |
QualitativeSpecies(long level,
long version,
long pkgVersion)
Creates a new
QualitativeSpecies with the given level, version, and package version. |
QualitativeSpecies(QualitativeSpecies orig)
Copy constructor for
QualitativeSpecies . |
QualitativeSpecies(QualPkgNamespaces qualns)
Creates a new
QualitativeSpecies with the given QualPkgNamespaces object. |
QualPkgNamespaces() |
QualPkgNamespaces(long level) |
QualPkgNamespaces(long level,
long version) |
QualPkgNamespaces(long level,
long version,
long pkgVersion) |
QualPkgNamespaces(long level,
long version,
long pkgVersion,
java.lang.String prefix) |
QualPkgNamespaces(QualPkgNamespaces orig) |
RadialGradient()
Creates a new
RadialGradient object with the given SBML level
and SBML version. |
RadialGradient(long level)
Creates a new
RadialGradient object with the given SBML level
and SBML version. |
RadialGradient(long level,
long version)
Creates a new
RadialGradient object with the given SBML level
and SBML version. |
RadialGradient(long level,
long version,
long pkgVersion)
Creates a new
RadialGradient object with the given SBML level
and SBML version. |
RadialGradient(RenderPkgNamespaces renderns)
Creates a new
RadialGradient object with the given SBMLNamespaces . |
RadialGradient(RenderPkgNamespaces renderns,
java.lang.String id)
Constructor which creates a
RadialGradient with no gradient stops. |
RadialGradient(XMLNode node,
long l2version)
Creates a new
RadialGradient object from the given XMLNode object. |
RateRule(long level,
long version)
|
RateRule(SBMLNamespaces sbmlns)
|
Reaction(long level,
long version)
|
Reaction(Reaction orig)
Copy constructor; creates a copy of this
Reaction . |
Reaction(SBMLNamespaces sbmlns)
|
ReactionGlyph()
Creates a new
ReactionGlyph . |
ReactionGlyph(LayoutPkgNamespaces layoutns)
Creates a new
ReactionGlyph with the given LayoutPkgNamespaces object. |
ReactionGlyph(LayoutPkgNamespaces layoutns,
java.lang.String id)
Creates a ResctionGlyph with the given
LayoutPkgNamespaces and id. |
ReactionGlyph(LayoutPkgNamespaces layoutns,
java.lang.String id,
java.lang.String reactionId)
Creates a ResctionGlyph with the given
LayoutPkgNamespaces , id and set the id of the
associated reaction to the second argument. |
ReactionGlyph(long level)
Creates a new
ReactionGlyph . |
ReactionGlyph(long level,
long version)
Creates a new
ReactionGlyph . |
ReactionGlyph(long level,
long version,
long pkgVersion)
Creates a new
ReactionGlyph . |
ReactionGlyph(ReactionGlyph source)
Copy constructor.
|
ReactionGlyph(XMLNode node)
Creates a new
ReactionGlyph from the given XMLNode |
ReactionGlyph(XMLNode node,
long l2version)
Creates a new
ReactionGlyph from the given XMLNode |
Rectangle()
Creates a new Rectangle object with the given SBML level
and SBML version.
|
Rectangle(long level)
Creates a new Rectangle object with the given SBML level
and SBML version.
|
Rectangle(long level,
long version)
Creates a new Rectangle object with the given SBML level
and SBML version.
|
Rectangle(long level,
long version,
long pkgVersion)
Creates a new Rectangle object with the given SBML level
and SBML version.
|
Rectangle(RenderPkgNamespaces renderns)
Creates a new Rectangle object with the given
SBMLNamespaces . |
Rectangle(RenderPkgNamespaces renderns,
java.lang.String id)
Instantiates a new Rectangle object.
|
Rectangle(RenderPkgNamespaces renderns,
java.lang.String id,
RelAbsVector x,
RelAbsVector y,
RelAbsVector w,
RelAbsVector h)
Instantiates a new Rectangle object.
|
Rectangle(RenderPkgNamespaces renderns,
java.lang.String id,
RelAbsVector x,
RelAbsVector y,
RelAbsVector z,
RelAbsVector w,
RelAbsVector h)
Instantiates a new Rectangle object.
|
Rectangle(XMLNode node)
Creates a new Rectangle object from the given
XMLNode object. |
Rectangle(XMLNode node,
long l2version)
Creates a new Rectangle object from the given
XMLNode object. |
ReferenceGlyph()
Creates a new
ReferenceGlyph with the given SBML level, version and
package version. |
ReferenceGlyph(LayoutPkgNamespaces layoutns)
Ctor.
|
ReferenceGlyph(LayoutPkgNamespaces layoutns,
java.lang.String sid,
java.lang.String glyphId,
java.lang.String referenceId,
java.lang.String role)
Creates a new
ReferenceGlyph . |
ReferenceGlyph(long level)
Creates a new
ReferenceGlyph with the given SBML level, version and
package version. |
ReferenceGlyph(long level,
long version)
Creates a new
ReferenceGlyph with the given SBML level, version and
package version. |
ReferenceGlyph(long level,
long version,
long pkgVersion)
Creates a new
ReferenceGlyph with the given SBML level, version and
package version. |
ReferenceGlyph(ReferenceGlyph source)
Copy constructor.
|
ReferenceGlyph(XMLNode node)
Creates a new
ReferenceGlyph from the given XMLNode |
ReferenceGlyph(XMLNode node,
long l2version)
Creates a new
ReferenceGlyph from the given XMLNode |
RenderCubicBezier()
Creates a new
RenderCubicBezier object with the given SBML level
and SBML version. |
RenderCubicBezier(long level)
Creates a new
RenderCubicBezier object with the given SBML level
and SBML version. |
RenderCubicBezier(long level,
long version)
Creates a new
RenderCubicBezier object with the given SBML level
and SBML version. |
RenderCubicBezier(long level,
long version,
long pkgVersion)
Creates a new
RenderCubicBezier object with the given SBML level
and SBML version. |
RenderCubicBezier(RenderCubicBezier orig)
Copy constructor for
RenderCubicBezier objects. |
RenderCubicBezier(RenderPkgNamespaces renderns)
Creates a new
RenderCubicBezier object with the given SBMLNamespaces . |
RenderCubicBezier(RenderPkgNamespaces renderns,
RelAbsVector bp1_x,
RelAbsVector bp1_y,
RelAbsVector bp1_z,
RelAbsVector bp2_x,
RelAbsVector bp2_y,
RelAbsVector bp2_z,
RelAbsVector end_x,
RelAbsVector end_y,
RelAbsVector end_z)
Creates a
CubicBezier with the given points. |
RenderCubicBezier(XMLNode node)
Creates a new
RenderCubicBezier object from the given XMLNode object. |
RenderCubicBezier(XMLNode node,
long l2version)
Creates a new
RenderCubicBezier object from the given XMLNode object. |
RenderCurve()
Creates a new
RenderCurve object with the given SBML level
and SBML version. |
RenderCurve(long level)
Creates a new
RenderCurve object with the given SBML level
and SBML version. |
RenderCurve(long level,
long version)
Creates a new
RenderCurve object with the given SBML level
and SBML version. |
RenderCurve(long level,
long version,
long pkgVersion)
Creates a new
RenderCurve object with the given SBML level
and SBML version. |
RenderCurve(RenderPkgNamespaces renderns)
Creates a new
RenderCurve object with the given SBMLNamespaces . |
RenderCurve(RenderPkgNamespaces renderns,
java.lang.String id)
Instantiates an empty curve object with the given
id . |
RenderCurve(XMLNode node)
Creates a new
RenderCurve object from the given XMLNode object. |
RenderCurve(XMLNode node,
long l2version)
Creates a new
RenderCurve object from the given XMLNode object. |
RenderGroup()
Creates a new
RenderGroup object with the given SBML level
and SBML version. |
RenderGroup(long level)
Creates a new
RenderGroup object with the given SBML level
and SBML version. |
RenderGroup(long level,
long version)
Creates a new
RenderGroup object with the given SBML level
and SBML version. |
RenderGroup(long level,
long version,
long pkgVersion)
Creates a new
RenderGroup object with the given SBML level
and SBML version. |
RenderGroup(RenderPkgNamespaces renderns)
Creates a new
RenderGroup object with the given SBMLNamespaces . |
RenderGroup(RenderPkgNamespaces renderns,
java.lang.String id)
Instantiates a new
RenderGroup object. |
RenderGroup(XMLNode group)
Creates a new
RenderGroup object from the given XMLNode object. |
RenderGroup(XMLNode group,
long l2version)
Creates a new
RenderGroup object from the given XMLNode object. |
RenderPkgNamespaces() |
RenderPkgNamespaces(long level) |
RenderPkgNamespaces(long level,
long version) |
RenderPkgNamespaces(long level,
long version,
long pkgVersion) |
RenderPkgNamespaces(long level,
long version,
long pkgVersion,
java.lang.String prefix) |
RenderPkgNamespaces(RenderPkgNamespaces orig) |
RenderPoint()
Creates a new
RenderPoint object with the given SBML level
and SBML version. |
RenderPoint(long level)
Creates a new
RenderPoint object with the given SBML level
and SBML version. |
RenderPoint(long level,
long version)
Creates a new
RenderPoint object with the given SBML level
and SBML version. |
RenderPoint(long level,
long version,
long pkgVersion)
Creates a new
RenderPoint object with the given SBML level
and SBML version. |
RenderPoint(RenderPkgNamespaces renderns)
Creates a new
RenderPoint object with the given SBMLNamespaces . |
RenderPoint(RenderPkgNamespaces renderns,
RelAbsVector x,
RelAbsVector y)
Creates a new point with the given ccordinates.
|
RenderPoint(RenderPkgNamespaces renderns,
RelAbsVector x,
RelAbsVector y,
RelAbsVector z)
Creates a new point with the given ccordinates.
|
RenderPoint(RenderPoint orig)
Copy constructor for
RenderPoint objects. |
RenderPoint(XMLNode node)
Creates a new
RenderPoint object from the given XMLNode object. |
RenderPoint(XMLNode node,
long l2version)
Creates a new
RenderPoint object from the given XMLNode object. |
ReplacedBy()
Creates a new
ReplacedBy with the given level, version, and package
version. |
ReplacedBy(CompPkgNamespaces compns)
Creates a new
ReplacedBy with the given CompPkgNamespaces object. |
ReplacedBy(long level)
Creates a new
ReplacedBy with the given level, version, and package
version. |
ReplacedBy(long level,
long version)
Creates a new
ReplacedBy with the given level, version, and package
version. |
ReplacedBy(long level,
long version,
long pkgVersion)
Creates a new
ReplacedBy with the given level, version, and package
version. |
ReplacedBy(ReplacedBy source)
Copy constructor.
|
ReplacedElement()
Creates a new
ReplacedElement with the given level, version, and package
version. |
ReplacedElement(CompPkgNamespaces compns)
Creates a new
ReplacedElement with the given CompPkgNamespaces object. |
ReplacedElement(long level)
Creates a new
ReplacedElement with the given level, version, and package
version. |
ReplacedElement(long level,
long version)
Creates a new
ReplacedElement with the given level, version, and package
version. |
ReplacedElement(long level,
long version,
long pkgVersion)
Creates a new
ReplacedElement with the given level, version, and package
version. |
ReplacedElement(ReplacedElement source)
Copy constructor.
|
SBaseRef()
Creates a new
SBaseRef with the given level, version, and package version. |
SBaseRef(CompPkgNamespaces compns)
Creates a new
SBaseRef with the given CompPkgNamespaces object. |
SBaseRef(long level)
Creates a new
SBaseRef with the given level, version, and package version. |
SBaseRef(long level,
long version)
Creates a new
SBaseRef with the given level, version, and package version. |
SBaseRef(long level,
long version,
long pkgVersion)
Creates a new
SBaseRef with the given level, version, and package version. |
SBaseRef(SBaseRef source)
Copy constructor.
|
SBMLDocument()
Creates a new
SBMLDocument , optionally with given values for the SBML
Level and Version. |
SBMLDocument(long level)
Creates a new
SBMLDocument , optionally with given values for the SBML
Level and Version. |
SBMLDocument(long level,
long version)
Creates a new
SBMLDocument , optionally with given values for the SBML
Level and Version. |
SBMLDocument(SBMLDocument orig)
Copy constructor; creates a copy of this
SBMLDocument . |
SBMLDocument(SBMLNamespaces sbmlns)
|
SBMLNamespaces()
|
SBMLNamespaces(long level)
|
SBMLNamespaces(long level,
long version)
|
SBMLNamespaces(long level,
long version,
java.lang.String pkgName,
long pkgVersion)
(For extensions) Creates a new
SBMLNamespaces object corresponding to
the combination of (1) the given SBML level and version , and (2)
the given package with the package version . |
SBMLNamespaces(long level,
long version,
java.lang.String pkgName,
long pkgVersion,
java.lang.String pkgPrefix)
(For extensions) Creates a new
SBMLNamespaces object corresponding to
the combination of (1) the given SBML level and version , and (2)
the given package with the package version . |
SBMLNamespaces(SBMLNamespaces orig)
Copy constructor; creates a copy of a
SBMLNamespaces . |
Species(long level,
long version)
|
Species(SBMLNamespaces sbmlns)
|
Species(Species orig)
Copy constructor; creates a copy of this
Species object. |
SpeciesGlyph()
Creates a new
SpeciesGlyph with the given SBML level, version, and package version
and the id of the associated species set to the empty string. |
SpeciesGlyph(LayoutPkgNamespaces layoutns)
Ctor.
|
SpeciesGlyph(LayoutPkgNamespaces layoutns,
java.lang.String id)
Creates a new
SpeciesGlyph with the given id . |
SpeciesGlyph(LayoutPkgNamespaces layoutns,
java.lang.String id,
java.lang.String speciesId)
Creates a new
SpeciesGlyph with the given id and the id of the
associated species object set to the second argument. |
SpeciesGlyph(long level)
Creates a new
SpeciesGlyph with the given SBML level, version, and package version
and the id of the associated species set to the empty string. |
SpeciesGlyph(long level,
long version)
Creates a new
SpeciesGlyph with the given SBML level, version, and package version
and the id of the associated species set to the empty string. |
SpeciesGlyph(long level,
long version,
long pkgVersion)
Creates a new
SpeciesGlyph with the given SBML level, version, and package version
and the id of the associated species set to the empty string. |
SpeciesGlyph(SpeciesGlyph source)
Copy constructor.
|
SpeciesGlyph(XMLNode node)
Creates a new
SpeciesGlyph from the given XMLNode |
SpeciesGlyph(XMLNode node,
long l2version)
Creates a new
SpeciesGlyph from the given XMLNode |
SpeciesReference(long level,
long version)
|
SpeciesReference(SBMLNamespaces sbmlns)
|
SpeciesReference(SpeciesReference orig)
Copy constructor; creates a copy of this
SpeciesReference . |
SpeciesReferenceGlyph()
Creates a new
SpeciesReferenceGlyph with the given SBML level, version and
package version. |
SpeciesReferenceGlyph(LayoutPkgNamespaces layoutns)
Ctor.
|
SpeciesReferenceGlyph(LayoutPkgNamespaces layoutns,
java.lang.String sid,
java.lang.String speciesGlyphId,
java.lang.String speciesReferenceId,
int role)
Creates a new
SpeciesReferenceGlyph . |
SpeciesReferenceGlyph(long level)
Creates a new
SpeciesReferenceGlyph with the given SBML level, version and
package version. |
SpeciesReferenceGlyph(long level,
long version)
Creates a new
SpeciesReferenceGlyph with the given SBML level, version and
package version. |
SpeciesReferenceGlyph(long level,
long version,
long pkgVersion)
Creates a new
SpeciesReferenceGlyph with the given SBML level, version and
package version. |
SpeciesReferenceGlyph(SpeciesReferenceGlyph source)
Copy constructor.
|
SpeciesReferenceGlyph(XMLNode node)
Creates a new
SpeciesReferenceGlyph from the given XMLNode |
SpeciesReferenceGlyph(XMLNode node,
long l2version)
Creates a new
SpeciesReferenceGlyph from the given XMLNode |
SpeciesType(long level,
long version)
|
SpeciesType(SBMLNamespaces sbmlns)
|
SpeciesType(SpeciesType orig)
Copy constructor; creates a copy of this
SpeciesType . |
StoichiometryMath(long level,
long version)
Creates a new
StoichiometryMath object using the given SBML level
values. |
StoichiometryMath(SBMLNamespaces sbmlns)
|
StoichiometryMath(StoichiometryMath orig)
Copy constructor; creates a copy of this
StoichiometryMath . |
Submodel()
Creates a new
Submodel with the given level, version, and package
version. |
Submodel(CompPkgNamespaces compns)
Creates a new
Submodel with the given CompPkgNamespaces object. |
Submodel(long level)
Creates a new
Submodel with the given level, version, and package
version. |
Submodel(long level,
long version)
Creates a new
Submodel with the given level, version, and package
version. |
Submodel(long level,
long version,
long pkgVersion)
Creates a new
Submodel with the given level, version, and package
version. |
Submodel(Submodel source)
Copy constructor.
|
Text()
Creates a new
Text object with the given SBML level
and SBML version. |
Text(long level)
Creates a new
Text object with the given SBML level
and SBML version. |
Text(long level,
long version)
Creates a new
Text object with the given SBML level
and SBML version. |
Text(long level,
long version,
long pkgVersion)
Creates a new
Text object with the given SBML level
and SBML version. |
Text(RenderPkgNamespaces renderns)
Creates a new
Text object with the given SBMLNamespaces . |
Text(RenderPkgNamespaces renderns,
java.lang.String id)
Instantiates a new
Text object with the given id and position offset. |
Text(RenderPkgNamespaces renderns,
java.lang.String id,
RelAbsVector x)
Instantiates a new
Text object with the given id and position offset. |
Text(RenderPkgNamespaces renderns,
java.lang.String id,
RelAbsVector x,
RelAbsVector y)
Instantiates a new
Text object with the given id and position offset. |
Text(RenderPkgNamespaces renderns,
java.lang.String id,
RelAbsVector x,
RelAbsVector y,
RelAbsVector z)
Instantiates a new
Text object with the given id and position offset. |
Text(XMLNode node)
|
Text(XMLNode node,
long l2version)
|
TextGlyph()
Creates a new
TextGlyph with the given SBML level, versin and package
version. |
TextGlyph(LayoutPkgNamespaces layoutns)
Ctor.
|
TextGlyph(LayoutPkgNamespaces layoutns,
java.lang.String id)
Creates a new
TextGlyph . |
TextGlyph(LayoutPkgNamespaces layoutns,
java.lang.String id,
java.lang.String text)
Creates a new
TextGlyph . |
TextGlyph(long level)
Creates a new
TextGlyph with the given SBML level, versin and package
version. |
TextGlyph(long level,
long version)
Creates a new
TextGlyph with the given SBML level, versin and package
version. |
TextGlyph(long level,
long version,
long pkgVersion)
Creates a new
TextGlyph with the given SBML level, versin and package
version. |
TextGlyph(TextGlyph source)
Copy constructor.
|
TextGlyph(XMLNode node)
|
TextGlyph(XMLNode node,
long l2version)
|
Transition()
Creates a new
Transition with the given level, version, and package version. |
Transition(long level)
Creates a new
Transition with the given level, version, and package version. |
Transition(long level,
long version)
Creates a new
Transition with the given level, version, and package version. |
Transition(long level,
long version,
long pkgVersion)
Creates a new
Transition with the given level, version, and package version. |
Transition(QualPkgNamespaces qualns)
Creates a new
Transition with the given QualPkgNamespaces object. |
Transition(Transition orig)
Copy constructor for
Transition . |
Trigger(long level,
long version)
|
Trigger(SBMLNamespaces sbmlns)
|
Trigger(Trigger orig)
Copy constructor; creates a copy of this
Trigger . |
Unit(long level,
long version)
|
Unit(SBMLNamespaces sbmlns)
|
Unit(Unit orig)
Copy constructor; creates a copy of this
Unit . |
UnitDefinition(long level,
long version)
|
UnitDefinition(SBMLNamespaces sbmlns)
|
UnitDefinition(UnitDefinition orig)
Copy constructor; creates a copy of this
UnitDefinition . |