class Pmesh4Reader extends PolygonFileReader
Modifier and Type | Field and Description |
---|---|
private int |
color |
private int |
iToken |
private int |
nPolygons |
private int |
nX |
private int |
nY |
private String |
pmeshError |
private String[] |
tokens |
(package private) float |
transparency |
private String |
type |
nTriangles, nVertices
allowSigma, ANGSTROMS_PER_BOHR, anisotropy, center, cJvxlEdgeNaN, colorFractionBase, colorFractionRange, contourVertexCount, dataMax, dataMean, dataMin, defaultCutoff, defaultMappedDataMax, defaultMappedDataMin, eccentricityMatrix, eccentricityMatrixInverse, eccentricityRatio, eccentricityScale, edgeFractionBase, edgeFractionRange, fractionData, hasColorData, haveSurfaceAtoms, isAnisotropic, isEccentric, isJvxl, isPeriodic, isProgressive, isQuiet, isXLowToHigh, jvxlColorDataRead, jvxlCutoff, jvxlData, jvxlDataIs2dContour, jvxlDataIsColorDensity, jvxlDataIsColorMapped, jvxlDataIsPrecisionColor, jvxlEdgeDataRead, jvxlFileHeaderBuffer, jvxlNSurfaceInts, jvxlVoxelBitSet, marchingCubes, marchingSquares, meshData, meshDataServer, minMax, nBytes, nDataPoints, nPointsX, nPointsY, nPointsZ, params, ptTemp, qpc, sg, vertexDataOnly, volumeData, volumetricOrigin, volumetricVectors, voxelCounts, voxelData, xyzMax, xyzMin, yzCount, yzPlanes
Constructor and Description |
---|
Pmesh4Reader() |
Modifier and Type | Method and Description |
---|---|
private void |
createMesh() |
private float |
getFloat() |
private int |
getInt() |
(package private) void |
getSurfaceData() |
(package private) void |
init2(SurfaceGenerator sg,
BufferedReader br) |
private String |
nextToken() |
private void |
readColor() |
private boolean |
readVertices() |
private boolean |
readVerticesAndPolygons() |
init2PFR, readSurfaceData, readVolumeData, readVolumeParameters
closeReader, closeReaderSFR, discardTempData, getQuotedStringNext, getTokens, init, init2SFR, newBinaryDocument, parseFloat, parseFloatArray, parseFloatArrayStr, parseFloatRange, parseFloatStr, parseInt, parseIntNext, parseIntStr, rd, setOutputChannel, setStream, skipTo
addTriangleCheck, addVC, addVertexCopy, applyColorScale, colorIsosurface, createIsosurface, discardTempDataSR, excludeMaximumSet, excludeMinimumSet, finalizeMapping, getColorPhaseIndex, getMinMaxMappedValues, getPlane, getPlaneSR, getSPF, getSurfaceAtomIndex, getSurfacePointAndFraction, getSurfacePointIndexAndFraction, getValue, getValue2, getValueAtPoint, gotoAndReadVoxelData, gotoData, initializeMapping, initializeVolumetricData, initPlanes, initSR, jvxlUpdateInfo, newVoxelDataCube, postProcessVertices, readAndSetVolumeParameters, readColorData, resetIsosurface, selectPocket, setBBox, setVectorAnisotropy, setVertexAnisotropy, setVolumeDataV, setVolumetricAnisotropy, setVolumetricOriginAnisotropy, slabIsosurface, updateSurfaceData, updateTriangles
private int nPolygons
private String pmeshError
private String type
private int color
float transparency
private int nX
private int nY
private String[] tokens
private int iToken
void init2(SurfaceGenerator sg, BufferedReader br)
init2
in class SurfaceFileReader
void getSurfaceData() throws Exception
getSurfaceData
in class PolygonFileReader
Exception
private boolean readVerticesAndPolygons()
private void createMesh()