public interface JmolAnnotationParser
Modifier and Type | Method and Description |
---|---|
String |
calculateDSSRStructure(Viewer vwr,
BS bsAtoms) |
String |
catalogStructureUnits(Viewer vwr,
SV svMap,
int[] modelAtomIndices,
Map<String,int[]> resMap,
Object object,
Map<String,Integer> modelMap) |
javajs.util.Lst<Object> |
catalogValidations(Viewer vwr,
SV validation,
int[] modelAtomIndices,
Map<String,int[]> valResMap,
Map<String,Integer> map,
Map<String,Integer> modelMap) |
void |
fixAtoms(int modelIndex,
SV v,
BS bsAddedMask,
int type,
int margin) |
String |
fixDSSRJSONMap(Map<String,Object> map) |
String |
getAnnotationInfo(Viewer vwr,
SV a,
String match,
int type,
int modelIndex) |
BS |
getAtomBits(Viewer vwr,
String key,
Object dssr,
Map<String,Object> cache,
int type,
int modelIndex,
BS bsModel) |
javajs.util.Lst<Float> |
getAtomValidation(Viewer vwr,
String type,
Atom atom) |
void |
getBasePairs(Viewer vwr,
int modelIndex) |
String |
getHBonds(ModelSet ms,
int modelIndex,
javajs.util.Lst<Bond> vHBonds,
boolean doReport) |
javajs.util.Lst<SV> |
initializeAnnotation(SV objAnn,
int type,
int modelIndex) |
void |
setGroup1(ModelSet ms,
int modelIndex) |
BS getAtomBits(Viewer vwr, String key, Object dssr, Map<String,Object> cache, int type, int modelIndex, BS bsModel)
void getBasePairs(Viewer vwr, int modelIndex)
String getHBonds(ModelSet ms, int modelIndex, javajs.util.Lst<Bond> vHBonds, boolean doReport)
String getAnnotationInfo(Viewer vwr, SV a, String match, int type, int modelIndex)
javajs.util.Lst<Object> catalogValidations(Viewer vwr, SV validation, int[] modelAtomIndices, Map<String,int[]> valResMap, Map<String,Integer> map, Map<String,Integer> modelMap)
String catalogStructureUnits(Viewer vwr, SV svMap, int[] modelAtomIndices, Map<String,int[]> resMap, Object object, Map<String,Integer> modelMap)
void setGroup1(ModelSet ms, int modelIndex)