public class MMCifValidationParser extends Object
Modifier and Type | Field and Description |
---|---|
private boolean |
asResidues |
private Map<String,Integer> |
atomMap |
private AtomSetCollectionReader |
reader |
private Map<String,int[]> |
resMap |
Constructor and Description |
---|
MMCifValidationParser() |
Modifier and Type | Method and Description |
---|---|
String |
finalizeRna3d(Map<String,Integer> modelMap) |
String |
finalizeValidations(Viewer vwr,
Map<String,Integer> modelMap)
Create property_xxxx for each validation category.
|
private int[] |
getModelAtomIndices()
prepare a list of starting atom indices for each
model, adding one additional one to indicate 1 + last atom index
|
private SV |
getRna3dMap(String addedData) |
private void |
mapAtomResIDs(Map<String,Integer> modelMap)
Map all atom and residue unit ids to atom indexes
|
MMCifValidationParser |
set(AtomSetCollectionReader reader) |
private String |
setProperties(javajs.util.Lst<Object> propList)
Set property_xxx for atoms from list of name, data, modelIndex series.
|
private boolean asResidues
private AtomSetCollectionReader reader
public MMCifValidationParser set(AtomSetCollectionReader reader)
public String finalizeValidations(Viewer vwr, Map<String,Integer> modelMap)
vwr
- modelMap
- private void mapAtomResIDs(Map<String,Integer> modelMap)
modelMap
- private int[] getModelAtomIndices()