public class MolecularOrbital extends Isosurface
Modifier and Type | Field and Description |
---|---|
private Map<String,Map<String,Object>> |
htModels |
private Integer |
moColorNeg |
private Integer |
moColorPos |
private Float |
moCutoff |
private boolean |
moDebug |
private int |
moDots |
private int |
moFill |
private int |
moFrontOnly |
private boolean |
moIsPositiveOnly |
private float[] |
moLinearCombination |
private int |
moMesh |
private Integer |
moMonteCarloCount |
private int |
moNumber |
private javajs.util.P4 |
moPlane |
private Integer |
moRandomSeed |
private Float |
moResolution |
private Float |
moScale |
private int |
moShell |
private javajs.util.Lst<Object> |
moSlab |
private Integer |
moSlabValue |
private Boolean |
moSquareData |
private Boolean |
moSquareLinear |
private String |
moTitleFormat |
private String |
moTranslucency |
private Float |
moTranslucentLevel |
private int |
myColorPt |
private String |
nboType |
private String |
strID |
private Map<String,Object> |
thisModel |
allowMesh, iHaveBitSets, jvxlData, keyXy, sg, thisMesh
bsDisplay, colix, color, connections, currentMesh, displayWithinDistance2, displayWithinPoints, explicitID, htObjects, isDisplayWithinNot, isFixed, linkedMesh, meshCount, meshes, modelIndex, nUnnamed, pickedMesh, pickedModel, pickedPt, pickedVertex, PREVIOUS_MESH_ID, previousMeshID, title
bsColixSet, bsSizeSet, isBioShape, ms, myType, RADIUS_MAX, shapeID, translucentAllowed, translucentLevel, vf, vwr
Constructor and Description |
---|
MolecularOrbital() |
Modifier and Type | Method and Description |
---|---|
protected void |
clearSg() |
private String |
getId(int modelIndex) |
String |
getMoInfo(int modelIndex) |
Object |
getProperty(String propertyName,
int index) |
private boolean |
getSettings(String strID) |
String |
getShapeState() |
void |
initShape() |
void |
merge(MeshCollection shape)
called by ParallelProcessor at completion
|
private void |
setOrbital(int moNumber,
float[] linearCombination) |
void |
setProperty(String propertyName,
Object value,
BS bs) |
addMeshInfo, addRequiredFile, addTriangleCheck, addVertexCopy, allocMesh, calculateGeodesicSurface, checkObjectClicked, checkObjectHovered, discardTempData, fillMeshData, getCapSlabInfo, getCmd, getPlane, getPolygonColorData, getPropertyData, getPropI, getShapeDetail, getSurfacePointIndexAndFraction, getValue, invalidateTriangles, newSg, notifySurfaceGenerationCompleted, notifySurfaceMappingCompleted, setOutputChannel, setPropI, setScriptInfo, slabPolygons
checkExplicit, clean, deleteMeshI, deleteMeshKey, getIndexFromName, getMesh, getMeshList, getPickedPoint, getPropDataMC, getPropMC, resetObjects, setModelVisibilityFlags, setPropMC, setStatusPicked, setTokenProperty
appendCmd, checkBoundsMinMax, checkObjectDragged, coordinateInRange, encodeColor, findNearestAtomIndex, getColix, getColixA, getColixB, getColixI, getColorCommand, getColorCommandUnk, getFontCommand, getPropShape, getSize, getSizeG, getTranslucentLabel, initializeShape, initModelSet, replaceGroup, setAtomClickability, setModelSet, setPropS, setShapeSizeRD, setSize, setSizeRD, wasClicked
private String moTranslucency
private Float moTranslucentLevel
private javajs.util.P4 moPlane
private Float moCutoff
private Float moResolution
private Float moScale
private Integer moColorPos
private Integer moColorNeg
private Integer moMonteCarloCount
private boolean moIsPositiveOnly
private Boolean moSquareData
private Boolean moSquareLinear
private Integer moRandomSeed
private int moFill
private int moMesh
private int moDots
private int moFrontOnly
private int moShell
private String moTitleFormat
private boolean moDebug
private int myColorPt
private String strID
private int moNumber
private float[] moLinearCombination
private javajs.util.Lst<Object> moSlab
private Integer moSlabValue
private String nboType
public void initShape()
initShape
in class Isosurface
public void setProperty(String propertyName, Object value, BS bs)
setProperty
in class Isosurface
private String getId(int modelIndex)
public Object getProperty(String propertyName, int index)
getProperty
in class Isosurface
public String getMoInfo(int modelIndex)
protected void clearSg()
clearSg
in class Isosurface
private boolean getSettings(String strID)
private void setOrbital(int moNumber, float[] linearCombination)
public String getShapeState()
getShapeState
in class Isosurface
public void merge(MeshCollection shape)
MeshCollection
merge
in class MeshCollection