Package | Description |
---|---|
jebl.evolution.align |
Provides classes and interfaces for pairwise alignment of two sequences.
|
jebl.evolution.align.scores |
Class and Description |
---|
Scores
Base class for all score matrices in the package.
|
Class and Description |
---|
AminoAcidScores |
Blosum45 |
Blosum50 |
Blosum55 |
Blosum60 |
Blosum62 |
Blosum65 |
Blosum70 |
Blosum75 |
Blosum80 |
Blosum85 |
Blosum90 |
NucleotideScores |
Pam100 |
Pam110 |
Pam120 |
Pam130 |
Pam140 |
Pam150 |
Pam160 |
Pam170 |
Pam180 |
Pam190 |
Pam200 |
Pam210 |
Pam220 |
Pam230 |
Pam240 |
Pam250 |
ScoreMatrix |
Scores
Base class for all score matrices in the package.
|
http://code.google.com/p/jebl2/