Interface | Description |
---|---|
Sequence |
A biomolecular sequence.
|
Sequences |
A set of sequence objects.
|
SequenceType |
Interface for sequences data types.
|
StateClassification |
Class | Description |
---|---|
AminoAcids |
Uninstantiable utility class with only static methods.
|
AminoAcidState | |
BasicSequence |
A default implementation of the Sequence interface.
|
CanonicalSequence |
A default implementation of the Sequence interface
that converts sequence characters to
States such that calling getString() will always return
uppercase residues with nucleotide U residues converted to T
|
Codons | |
CodonSequence |
A codon implementation of the Sequence interface.
|
CodonState |
As of 2007-07-30, instances of this class are only constructed for non-ambigous
nucleotide triplets - see
Codons . |
FilteredSequence | |
GaplessSequence | |
GeneticCode |
A set of standard genetic codes.
|
Nucleotides |
Uninstantiable utility class with only static methods.
|
NucleotideState | |
SequenceTester | |
SequenceType.Utils | |
State | |
StateClassification.Default | |
TranslatedSequence | |
Utils |
Exception | Description |
---|---|
SequenceStateException |
http://code.google.com/p/jebl2/