public class FCAlignHelper
extends java.lang.Object
Constructor and Description |
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FCAlignHelper(double[][] sij0,
int M0,
int N0,
double g0,
double h0)
do an alignment given the provided matrix sij0
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Modifier and Type | Method and Description |
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int |
getAlignPos(int[][] alignList)
record the aligned pairs in alignList[][0], alignList[][1];
return the number of aligned pairs
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