public interface FastqReader
Modifier and Type | Method and Description |
---|---|
void |
parse(java.lang.Readable readable,
ParseListener listener)
Parse the specified readable.
|
java.lang.Iterable<Fastq> |
read(java.io.File file)
Read zero or more FASTQ formatted sequences from the specified file.
|
java.lang.Iterable<Fastq> |
read(java.io.InputStream inputStream)
Read zero or more FASTQ formatted sequences from the specified input stream.
|
java.lang.Iterable<Fastq> |
read(java.net.URL url)
Read zero or more FASTQ formatted sequences from the specified url.
|
void |
stream(java.lang.Readable readable,
StreamListener listener)
Stream the specified readable.
|
void parse(java.lang.Readable readable, ParseListener listener) throws java.io.IOException
readable
- readable, must not be nulllistener
- low-level event based parser callback, must not be nulljava.io.IOException
- if an I/O error occursvoid stream(java.lang.Readable readable, StreamListener listener) throws java.io.IOException
readable
- readable, must not be nulllistener
- event based reader callback, must not be nulljava.io.IOException
- if an I/O error occursjava.lang.Iterable<Fastq> read(java.io.File file) throws java.io.IOException
file
- file to read from, must not be nulljava.io.IOException
- if an I/O error occursjava.lang.Iterable<Fastq> read(java.net.URL url) throws java.io.IOException
url
- URL to read from, must not be nulljava.io.IOException
- if an I/O error occursjava.lang.Iterable<Fastq> read(java.io.InputStream inputStream) throws java.io.IOException
inputStream
- input stream to read from, must not be nulljava.io.IOException
- if an I/O error occurs