public class SandboxStyleStructureProvider extends java.lang.Object implements StructureProvider
a1/2a1v/2a1v.cif.gz a1/2a1v/2a1v.dssp.gz a1/2a1v/2a1v.pdb-250.jpg.gz a1/2a1v/2a1v.pdb-500.jpg.gz a1/2a1v/2a1v.pdb-65.jpg.gz a1/2a1v/2a1v.pdb-80.jpg.gz a1/2a1v/2a1v.pdb1-250.jpg.gz a1/2a1v/2a1v.pdb1-500.jpg.gz a1/2a1v/2a1v.pdb1-65.jpg.gz a1/2a1v/2a1v.pdb1-80.jpg.gz a1/2a1v/2a1v.pdb1.gz a1/2a1v/2a1v.stride.gz a1/2a1v/2a1v.xml.gz a1/2a1v/pdb2a1v.ent.gz a1/2a1v/r2a1vsf.ent.gz a1/2a1w/2a1w-deriv.cif.gz a1/2a1w/2a1w-extatom.xml.gz a1/2a1w/2a1w-noatom.xml.gz a1/2a1w/2a1w.cif.gz a1/2a1w/2a1w.dssp.gz a1/2a1w/2a1w.pdb-250.jpg.gz a1/2a1w/2a1w.pdb-500.jpg.gz a1/2a1w/2a1w.pdb-65.jpg.gz a1/2a1w/2a1w.pdb-80.jpg.gz a1/2a1w/2a1w.pdb1-250.jpg.gz a1/2a1w/2a1w.pdb1-500.jpg.gz a1/2a1w/2a1w.pdb1-65.jpg.gz a1/2a1w/2a1w.pdb1-80.jpg.gz a1/2a1w/2a1w.pdb1.gz a1/2a1w/2a1w.pdb2-250.jpg.gz a1/2a1w/2a1w.pdb2-500.jpg.gz a1/2a1w/2a1w.pdb2-65.jpg.gz a1/2a1w/2a1w.pdb2-80.jpg.gz a1/2a1w/2a1w.pdb2.gz a1/2a1w/2a1w.pdb3-250.jpg.gz a1/2a1w/2a1w.pdb3-500.jpg.gz a1/2a1w/2a1w.pdb3-65.jpg.gz a1/2a1w/2a1w.pdb3-80.jpg.gz a1/2a1w/2a1w.pdb3.gz a1/2a1w/2a1w.pdb4-250.jpg.gz a1/2a1w/2a1w.pdb4-500.jpg.gz a1/2a1w/2a1w.pdb4-65.jpg.gz a1/2a1w/2a1w.pdb4-80.jpg.gz a1/2a1w/2a1w.pdb4.gz a1/2a1w/2a1w.pdb5-250.jpg.gz a1/2a1w/2a1w.pdb5-500.jpg.gz a1/2a1w/2a1w.pdb5-65.jpg.gz a1/2a1w/2a1w.pdb5-80.jpg.gz a1/2a1w/2a1w.pdb5.gz a1/2a1w/2a1w.pdb6-250.jpg.gz a1/2a1w/2a1w.pdb6-500.jpg.gz a1/2a1w/2a1w.pdb6-65.jpg.gz a1/2a1w/2a1w.pdb6-80.jpg.gz a1/2a1w/2a1w.pdb6.gz a1/2a1w/2a1w.stride.gz a1/2a1w/2a1w.xml.gz a1/2a1w/pdb2a1w.ent.gz a1/2a1w/r2a1wsf.ent.gz a1/2a1x/2a1x-deriv.cif.gz a1/2a1x/2a1x-extatom.xml.gz a1/2a1x/2a1x-noatom.xml.gz
Modifier and Type | Field and Description |
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static java.lang.String |
fileSeparator |
Constructor and Description |
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SandboxStyleStructureProvider() |
Modifier and Type | Method and Description |
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java.util.List<java.lang.String> |
getAllPDBIDs()
Returns a list of all PDB IDs that are available in this installation
|
FileParsingParameters |
getFileParsingParameters()
Get the parameters that should be used for file parsing
|
Structure |
getStructureById(java.lang.String pdbId)
get the structure for a PDB ID
|
void |
setFileParsingParameters(FileParsingParameters params)
Set the parameters that should be used for file parsing
|
void |
setPath(java.lang.String p)
directory where to find PDB files
|
public void setPath(java.lang.String p)
public Structure getStructureById(java.lang.String pdbId) throws java.io.IOException, StructureException
StructureProvider
getStructureById
in interface StructureProvider
java.io.IOException
StructureException
public void setFileParsingParameters(FileParsingParameters params)
StructureProvider
setFileParsingParameters
in interface StructureProvider
params
- FileParsingParameterspublic FileParsingParameters getFileParsingParameters()
StructureProvider
getFileParsingParameters
in interface StructureProvider
public java.util.List<java.lang.String> getAllPDBIDs() throws java.io.IOException
java.io.IOException